LXL04_015291 | RubberDandelionOmics

Gene overview

LXL04_015291

Reference: OH-1004 Chr: Chr03 Coordinates: 67621297-67625604 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1892 bp · LXL04_015291|LXL04_015291|OH1004|cDNA

CAAAGAGAAGAACGATCACATCTACATTTCTTCTATCACAAATGGAATCGGATTATGGACTTCCCAGAGAGCTTTCTCATCTCCAGAAGAATCGTTTGCTTTACCAGCCGGAGCTTCCTTCTTGCCTTCAGGGAACTACTGTGCGAGTAGAATTTGGAGATGCAACTACTGTCGCAGATTCATCTGGTGGCCACACTATCAGTCAATCGTTTCCTCACACATATGGTCAACGATTGGCTCATTTTATTAGGGCAACATCC...

CDS

Download CDS FASTA

1851 bp · LXL04_015291|LXL04_015291|OH1004|CDS

ATGGAATCGGATTATGGACTTCCCAGAGAGCTTTCTCATCTCCAGAAGAATCGTTTGCTTTACCAGCCGGAGCTTCCTTCTTGCCTTCAGGGAACTACTGTGCGAGTAGAATTTGGAGATGCAACTACTGTCGCAGATTCATCTGGTGGCCACACTATCAGTCAATCGTTTCCTCACACATATGGTCAACGATTGGCTCATTTTATTAGGGCAACATCCAAAGTCCCTGGTGCTCAGATTATTAGCACACATCCTGCAAT...

Protein

Download Protein FASTA

616 aa · LXL04_015291|LXL04_015291|OH1004|PROTEIN

MESDYGLPRELSHLQKNRLLYQPELPSCLQGTTVRVEFGDATTVADSSGGHTISQSFPHTYGQRLAHFIRATSKVPGAQIISTHPAIRVGLVFCGRQSPGGHNVVWGLHEALKIHNPKSTLLGFLGGSEGLFAQKTLEITDDVLATYKNQGGYDLLGRTKDQIRTTEQVNSAMAACKALKLDALIIVGGVTSNTDAAQLAETFAEAKCSTKVVGVPVTLNGDLKNQFVEANVGFDTICKVNSQLISNVCTDALSAEKYYY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015291`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015291

Location Chr03:67621297-67625604 (-)

Description Similar to PFP-ALPHA: Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76550`	Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase.	No verified direct reference in this release
`At1g20950`	Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015291 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006002 fructose 6-phosphate metabolic process Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0009750 response to fructose Biological Process

GO:0015979 photosynthesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0003872 6-phosphofructokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G20950

ath:AT1G76550

sot:102577617

sta:STHERM_c17480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.670

Rank 1 · LXL04_015291 · OH-1004

Nucleus0.195

Rank 2 · LXL04_015291 · OH-1004

Cell membrane0.129

Rank 3 · LXL04_015291 · OH-1004

Mitochondrion0.118

Rank 4 · LXL04_015291 · OH-1004

Endoplasmic reticulum0.077

Rank 5 · LXL04_015291 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00365.26PFK88-449 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015291	`PF00365.26`	PFK	88	449	5.9e-27	95.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C9K3`	Arabidopsis thaliana	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2	79.104%	Swiss-Prot	strong database homology
`Q9SYP2`	Arabidopsis thaliana	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1	78.232%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card