Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1759 bp · LXL04_015229|LXL04_015229|OH1004|cDNA
GAGAGAGAAACCAAAAATACCTGGAGAAGGGATAGAGAGAGAAAGGGGCATGGGTAAGGTAGGCGGAGGCGGAGCAACGACggcgaagaagaagaagaaaggccGTCCTTCTCTTTTAGATCTCCAGAAACGGGCTATAGAGCAACAGAAATTGCAAAATCAAGATCAATTACAACAGCGGAGATCCAATCGCCGGAACCCTAACTCGACTGCCAGCGACGTCGGTGAAGAAGAGTACTACGATGACGATGATGATGAGA...
1710 bp · LXL04_015229|LXL04_015229|OH1004|CDS
ATGGGTAAGGTAGGCGGAGGCGGAGCAACGACGGCGAAGAAGAAGAAGAAAGGCCGTCCTTCTCTTTTAGATCTCCAGAAACGGGCTATAGAGCAACAGAAATTGCAAAATCAAGATCAATTACAACAGCGGAGATCCAATCGCCGGAACCCTAACTCGACTGCCAGCGACGTCGGTGAAGAAGAGTACTACGATGACGATGATGATGAGAGGAAAGAGAAGAAAGTCAAGCTGGTTGTTCGCTTGCCCCAATCGGATCA...
Protein
Download Protein FASTA569 aa · LXL04_015229|LXL04_015229|OH1004|PROTEIN
MGKVGGGGATTAKKKKKGRPSLLDLQKRAIEQQKLQNQDQLQQRRSNRRNPNSTASDVGEEEYYDDDDDERKEKKVKLVVRLPQSDQQQQHFSSDLIRSSSVNSASYGSDSNADVDNRIVKSGSGGAVSDYQGEKVLKAMDTLHGSPLESGPTTPLPDKKLLVFILDRLQKANWVFKLVYRKDTHAVFSDPVDPNELPDYHEIIKHPMDFGTVRSKLDEGLYSNLEELEADVFLICSNAMQYNSSDTIYFRQAKSIQELA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015229 |
|---|---|
| TK1151 ID | TkA02G354490 |
| OH-1004 ID | LXL04_015229 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015229 |
|---|---|
| Location | Chr03:66392619-66395782 (-) |
| Description | Similar to Brpf3: Bromodomain and PHD finger-containing protein 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006271 DNA strand elongation involved in DNA replication Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0008284 positive regulation of cell population proliferation Biological Process GO:0045596 negative regulation of cell differentiation Biological Process GO:0045740 positive regulation of DNA replication Biological Process GO:0050793 regulation of developmental process Biological Process GO:1902459 positive regulation of stem cell population maintenance Biological Process GO:0000123 histone acetyltransferase complex Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG1845 hsa:27154 hsa:65980 mmu:105246 mmu:268936 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00439.31Bromodomain180-254 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015229 | PF00439.31 | Bromodomain | 180 | 254 | 1.1e-22 | 80.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.