LXL04_015116 | RubberDandelionOmics

Gene overview

LXL04_015116

Reference: OH-1004 Chr: Chr03 Coordinates: 63939707-63943979 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1201 bp · LXL04_015116|LXL04_015116|OH1004|cDNA

GGGTTAGGGTTTTACATTCCCGATCACAAGCAACTCCTGCAATCAGAGCAGAAAGTAAGAGCAAACTGACTCGAGATTGAAGATGTTGTATATAATCGGATTGGGATTGGGCGACGAAAGAGACATTACGCTAAGAGGATTAGAAGCTGTGAAGAAATGCCAAAAGCTCTACATTGAATCCTACACATCTCTCCTTTCCTTTGGTATCTCCAAAGATGGCATCTCCACGCTGGAAAAATTGTATGGAAAGGAACTTACAG...

CDS

Download CDS FASTA

1125 bp · LXL04_015116|LXL04_015116|OH1004|CDS

TTGAAGATGTTGTATATAATCGGATTGGGATTGGGCGACGAAAGAGACATTACGCTAAGAGGATTAGAAGCTGTGAAGAAATGCCAAAAGCTCTACATTGAATCCTACACATCTCTCCTTTCCTTTGGTATCTCCAAAGATGGCATCTCCACGCTGGAAAAATTGTATGGAAAGGAACTTACAGTTGCAGATAGGGAAATGGTGGAAGAAAAAGCTGATGACATGTTGTTGGAGGCTCGTGAATTTGATGTTGCTTTCCT...

Protein

Download Protein FASTA

374 aa · LXL04_015116|LXL04_015116|OH1004|PROTEIN

MKMLYIIGLGLGDERDITLRGLEAVKKCQKLYIESYTSLLSFGISKDGISTLEKLYGKELTVADREMVEEKADDMLLEAREFDVAFLVVGDPFGATTHSDLVVRAKKLEVEVKVIYNASVMNAVGVCGLQLYRYGETVSLPFFTDTWRPDSFYEKIQRNRGLGLHTLCLLDIRVKEPSLESLCRGKKQYEPPSFMTIGVAIDQLLEVEQLRGESAYNEDTLCVGFARLGSESQMVVAGSMKQLRTVDFGQPLHCLTIVGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015116`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015116

Location Chr03:63939707-63943979 (+)

Description Similar to At4g31790: Probable diphthine methyl ester synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31790`	S-adenosyl-L-methionine-dependent methyltransferase that catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015116 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0017183 protein histidyl modification to diphthamide Biological Process

GO:0032259 methylation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016740 transferase activity Molecular Function

GO:0141133 diphthine methyl ester synthase activity Molecular Function

KEGG gene cross-reference

ath:AT4G31790

bta:508904

ddi:DDB_G0276115

hsa:51611

mmu:69740

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.641

Rank 1 · LXL04_015116 · OH-1004

Nucleus0.415

Rank 2 · LXL04_015116 · OH-1004

Mitochondrion0.118

Rank 3 · LXL04_015116 · OH-1004

Peroxisome0.065

Rank 4 · LXL04_015116 · OH-1004

Endoplasmic reticulum0.039

Rank 5 · LXL04_015116 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00590.26TP_methylase3-243 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015116	`PF00590.26`	TP_methylase	3	243	6.6e-20	72.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O81769`	Arabidopsis thaliana	Probable diphthine methyl ester synthase	77.941%	Swiss-Prot	strong database homology

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