Gene Card
Gene overview
cDNA / CDS / Protein Sequences
441 bp · LXL04_015096|LXL04_015096|OH1004|cDNA
ATGGCCATTTCAGCTTCATCTTCCTTCTTTACTTCCTCTAATCTCCCCCTACATTCACACCAACAGTCGAGATCGATCTCAACCTCCGTCAGTTTCGGAAGAGTTCGGATTTCTGCTTCTTACGCCACAGCAGAGACCACCGCCACGGAGGCCATTAGGTCGTCCCGTAATGGTAGTCAGCCATCGCTATATGAAGTGCTCGGGGTTCGAATCGGAGCTGATATCGGAGACGTGAAAGCAGCGTACCGTCGATTAGCGAG...
441 bp · LXL04_015096|LXL04_015096|OH1004|CDS
ATGGCCATTTCAGCTTCATCTTCCTTCTTTACTTCCTCTAATCTCCCCCTACATTCACACCAACAGTCGAGATCGATCTCAACCTCCGTCAGTTTCGGAAGAGTTCGGATTTCTGCTTCTTACGCCACAGCAGAGACCACCGCCACGGAGGCCATTAGGTCGTCCCGTAATGGTAGTCAGCCATCGCTATATGAAGTGCTCGGGGTTCGAATCGGAGCTGATATCGGAGACGTGAAAGCAGCGTACCGTCGATTAGCGAG...
Protein
Download Protein FASTA146 aa · LXL04_015096|LXL04_015096|OH1004|PROTEIN
MAISASSSFFTSSNLPLHSHQQSRSISTSVSFGRVRISASYATAETTATEAIRSSRNGSQPSLYEVLGVRIGADIGDVKAAYRRLARVLHPDVGSRHSSADEFMKVHSAYTTLSDPAKRAEYDRSMVLMRAAGSCRSRRWETDQCW
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015096 |
|---|---|
| TK1151 ID | TkA02G369320 |
| OH-1004 ID | LXL04_015096 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 65.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015096 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:63426301-63426741 (-) | |||||||||
| Description | Similar to ATJ11: Chaperone protein dnaJ 11, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006260 DNA replication Biological Process GO:0006457 protein folding Biological Process GO:0009408 response to heat Biological Process GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway Biological Process GO:0042026 protein refolding Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0005524 ATP binding Molecular Function GO:0008270 zinc ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G13830 ath:AT4G36040 bbe:BBR47_20310 mth:MTH_1291 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00226.37DnaJ63-123 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015096 | PF00226.37 | DnaJ | 63 | 123 | 7.2e-18 | 65.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.