LXL04_015056 | RubberDandelionOmics

Gene overview

LXL04_015056

Reference: OH-1004 Chr: Chr03 Coordinates: 62748254-62750910 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2220 bp · LXL04_015056|LXL04_015056|OH1004|cDNA

ATGGTTGGGAAAGTAGACGCCGCGAAGGGCGGTGCGAAGTCTTTGCAGTCGCCGGCGTCCAATCAAGCTACCTCCAAGCCCGATCTGTCATCCATTTCCACAACATTCTCATTCAAAACCCTGAAATTGAAAACGAAGCAACAAGAGTTGTTGATCCGAGTCACAATCCTCGGCCTCGTCTACATTTTAGCTTTCATCACTCGTCTCTTCAGCGTTCTCCGCTACGAGAGTATGATTCATGAATTCGATCCTTATTTTAA...

CDS

Download CDS FASTA

2220 bp · LXL04_015056|LXL04_015056|OH1004|CDS

ATGGTTGGGAAAGTAGACGCCGCGAAGGGCGGTGCGAAGTCTTTGCAGTCGCCGGCGTCCAATCAAGCTACCTCCAAGCCCGATCTGTCATCCATTTCCACAACATTCTCATTCAAAACCCTGAAATTGAAAACGAAGCAACAAGAGTTGTTGATCCGAGTCACAATCCTCGGCCTCGTCTACATTTTAGCTTTCATCACTCGTCTCTTCAGCGTTCTCCGCTACGAGAGTATGATTCATGAATTCGATCCTTATTTTAA...

Protein

Download Protein FASTA

739 aa · LXL04_015056|LXL04_015056|OH1004|PROTEIN

MVGKVDAAKGGAKSLQSPASNQATSKPDLSSISTTFSFKTLKLKTKQQELLIRVTILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLYLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAIIYWTLKFLRFAVHIREVCVLTAPFFASNTTIVAYFFGKEVWDSGAGLVAAALIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWSLASAFGYFYMVSAWGGYVFIINLIPLYVLVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015056`
TK1151 ID	TkA02G371410
OH-1004 ID	LXL04_015056
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015056

Location Chr03:62748254-62750910 (+)

Description Similar to STT3B: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g34130`	Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0675500`	Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015056 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006487 protein N-linked glycosylation Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0043687 post-translational protein modification Biological Process

GO:0180058 protein co-translational transfer of dolichol-linked oligosaccharide Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0008250 oligosaccharyltransferase complex Cellular Component

GO:0016020 membrane Cellular Component

GO:0160226 oligosaccharyltransferase complex A Cellular Component

GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G34130

ddi:DDB_G0285159

dosa:Os04g0675500

hsa:3703

pon:100174363

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.873

Rank 1 · LXL04_015056 · OH-1004

Cytoplasm0.070

Rank 2 · LXL04_015056 · OH-1004

Nucleus0.057

Rank 3 · LXL04_015056 · OH-1004

Mitochondrion0.052

Rank 4 · LXL04_015056 · OH-1004

Cell membrane0.046

Rank 5 · LXL04_015056 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02516.21STT354-452 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015056	`PF02516.21`	STT3	54	452	7.9e-118	395.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FX21`	Arabidopsis thaliana	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	87.211%	Swiss-Prot	strong database homology
`Q7XQ88`	Oryza sativa subsp. japonica	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	85.149%	Swiss-Prot	strong database homology

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