Gene Card
Gene overview
cDNA / CDS / Protein Sequences
582 bp · LXL04_015044|LXL04_015044|OH1004|cDNA
ATGAGACTGCGATATGCCATGGTATGCTCCTCAAATCAGAACAGAAGCATGGAGGCTCACTTCATCCTCAAGAGGGAAGGATTCGATGTTTCTTCATATGGAACTGGCACTCATGTGAAACTCCCAGGCCCTTCACTAAGAGAACCAAATGTCTATGAATTTGGCACTCCTTACAAGCAGATGTTTGATGAACTCAGGCGTAAAGACCCTGAACTTTATAAGCGCAATGGCATACTCCCAATGCTGAAGAGGAACTTGGG...
582 bp · LXL04_015044|LXL04_015044|OH1004|CDS
ATGAGACTGCGATATGCCATGGTATGCTCCTCAAATCAGAACAGAAGCATGGAGGCTCACTTCATCCTCAAGAGGGAAGGATTCGATGTTTCTTCATATGGAACTGGCACTCATGTGAAACTCCCAGGCCCTTCACTAAGAGAACCAAATGTCTATGAATTTGGCACTCCTTACAAGCAGATGTTTGATGAACTCAGGCGTAAAGACCCTGAACTTTATAAGCGCAATGGCATACTCCCAATGCTGAAGAGGAACTTGGG...
Protein
Download Protein FASTA193 aa · LXL04_015044|LXL04_015044|OH1004|PROTEIN
MRLRYAMVCSSNQNRSMEAHFILKREGFDVSSYGTGTHVKLPGPSLREPNVYEFGTPYKQMFDELRRKDPELYKRNGILPMLKRNLGVKTAPQRWQENMADGQFDVVFTFEEKVFDMVAEDLHTRDHVLLKPVLVINLEVKDNHEEASIGARQTLTLCQELEATDRWEDVIDDVISAFEQRHRRKVVYTISFY
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015044 |
|---|---|
| TK1151 ID | TkA02G372260 |
| OH-1004 ID | LXL04_015044 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015044 |
|---|---|
| Location | Chr03:62492863-62493703 (+) |
| Description | Similar to ssu72: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006369 termination of RNA polymerase II transcription Biological Process GO:0031124 mRNA 3'-end processing Biological Process GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005847 mRNA cleavage and polyadenylation specificity factor complex Cellular Component GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity Molecular Function |
| KEGG gene cross-reference | bta:614837 dre:393701 gga:419410 mmu:68991 rno:298681 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04722.19Ssu723-193 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015044 | PF04722.19 | Ssu72 | 3 | 193 | 2.8e-80 | 269.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.