LXL04_014935 | RubberDandelionOmics

Gene overview

LXL04_014935

Reference: OH-1004 Chr: Chr03 Coordinates: 59892285-59893132 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

627 bp · LXL04_014935|LXL04_014935|OH1004|cDNA

ATGAAATGGGTATACCACCGGCTGTCTTCACTTCACTCTTCAGTATCACTAAATCAATTTGAATCGGGAGTTCGCCCTTCCGTCTTCACTCTTCAGTCTTCACCTCCACAGCTCCGATCTCCATTTGAATCCGACGCTGCCGAGTGCGGACTGCCTTCCGTCTTCACTCTTCTACTTCCCTGTTTCTCAATTTCTGCTCCGATCCGACGCTGCGAGACCTCCACAGCTCCGATCCGACGCTGCCGACGCTGCGAGACCTA...

CDS

Download CDS FASTA

627 bp · LXL04_014935|LXL04_014935|OH1004|CDS

ATGAAATGGGTATACCACCGGCTGTCTTCACTTCACTCTTCAGTATCACTAAATCAATTTGAATCGGGAGTTCGCCCTTCCGTCTTCACTCTTCAGTCTTCACCTCCACAGCTCCGATCTCCATTTGAATCCGACGCTGCCGAGTGCGGACTGCCTTCCGTCTTCACTCTTCTACTTCCCTGTTTCTCAATTTCTGCTCCGATCCGACGCTGCGAGACCTCCACAGCTCCGATCCGACGCTGCCGACGCTGCGAGACCTA...

Protein

Download Protein FASTA

208 aa · LXL04_014935|LXL04_014935|OH1004|PROTEIN

MKWVYHRLSSLHSSVSLNQFESGVRPSVFTLQSSPPQLRSPFESDAAECGLPSVFTLLLPCFSISAPIRRCETSTAPIRRCRRCETYHHSFHSSDLTLTSSSFCFPVSISASLVFCFLISDFGFYGNNDVENARINRNSQRNAGTTGANEDSVVCQKLCMREDGKQQVCIVGLQEFMVSHVETVKELIERGNATRSTGTTGANEESSR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014935`
TK1151 ID	TkA02G382970
OH-1004 ID	LXL04_014935
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014935

Location Chr03:59892285-59893132 (+)

Description Similar to KIN13B: Kinesin-like protein KIN-13B

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16060`	Acts redundantly with KIN13A to modulate cell wall synthesis and cell expansion via the THE1 pathway.	Atkinesin-13A modulates cell-wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway.2014 · DOI: 10.1371/journal.pgen.1004627
`At3g16630`	Internal motor kinesin involved in trichome morphogenesis.	An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis.2005 · DOI: 10.1091/mbc.e04-05-0400 AtKinesin-13A is located on Golgi-associated vesicle and involved in vesicle formation/budding in Arabidopsis root-cap peripheral cells.2009 · DOI: 10.1186/1471-2229-9-138 Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns.2013 · DOI: 10.1105/tpc.113.117853 Atkinesin-13A modulates cell-wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway.2014 · DOI: 10.1371/journal.pgen.1004627

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0625200`	Kinesin-like protein KIN-13B.	No verified direct reference in this release
`Os05g0154700`	Kinesin-like protein KIN-13A.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014935 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000212 meiotic spindle organization Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0007019 microtubule depolymerization Biological Process

GO:0007051 spindle organization Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0007057 spindle assembly involved in female meiosis I Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0045167 asymmetric protein localization involved in cell fate determination Biological Process

GO:0051296 establishment of meiotic spindle orientation Biological Process

GO:0051298 centrosome duplication Biological Process

GO:0051301 cell division Biological Process

KEGG gene cross-reference

ath:AT3G16060

ath:AT3G16630

dme:Dmel_CG1453

dosa:Os05g0154700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.495

Rank 1 · LXL04_014935 · OH-1004

Nucleus0.461

Rank 2 · LXL04_014935 · OH-1004

Cell membrane0.087

Rank 3 · LXL04_014935 · OH-1004

Mitochondrion0.081

Rank 4 · LXL04_014935 · OH-1004

Endoplasmic reticulum0.059

Rank 5 · LXL04_014935 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225.30Kinesin156-208 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014935	`PF00225.30`	Kinesin	156	208	4.7e-09	36.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940Y8`	Arabidopsis thaliana	Kinesin-like protein KIN-13B	81.132%	Swiss-Prot	weak database homology
`Q940B8`	Arabidopsis thaliana	Kinesin-like protein KIN-13A	77.358%	Swiss-Prot	weak database homology
`B9EY52`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-13B	88.462%	Swiss-Prot	weak database homology
`B9FMJ3`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-13A	79.245%	Swiss-Prot	weak database homology

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