LXL04_014907 | RubberDandelionOmics

Gene overview

LXL04_014907

Reference: OH-1004 Chr: Chr03 Coordinates: 59389535-59391222 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1074 bp · LXL04_014907|LXL04_014907|OH1004|cDNA

ATGTCTTGCTACAAGGGAAAGTATGCTGATGAACTTATCGCCAACGCTACCTACATTGGTACCCCCGGCAAGGGTATCCTCGCCGCCGATGAGTCCACCGGCACAATCGGGAAGCGTCTGTCAAGCATCAACGTCGAGAACAACGAGCCCAACAGGAGAGCCCTCCGCGAGCTTCTTTTCTGCACTCCCGGCGCCCTCCAATACCTCAGCGGAATCATCCTCTTCGAGGAAACTCTCTACCAAAAAACCGCCGCCGGTAA...

CDS

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1074 bp · LXL04_014907|LXL04_014907|OH1004|CDS

ATGTCTTGCTACAAGGGAAAGTATGCTGATGAACTTATCGCCAACGCTACCTACATTGGTACCCCCGGCAAGGGTATCCTCGCCGCCGATGAGTCCACCGGCACAATCGGGAAGCGTCTGTCAAGCATCAACGTCGAGAACAACGAGCCCAACAGGAGAGCCCTCCGCGAGCTTCTTTTCTGCACTCCCGGCGCCCTCCAATACCTCAGCGGAATCATCCTCTTCGAGGAAACTCTCTACCAAAAAACCGCCGCCGGTAA...

Protein

Download Protein FASTA

357 aa · LXL04_014907|LXL04_014907|OH1004|PROTEIN

MSCYKGKYADELIANATYIGTPGKGILAADESTGTIGKRLSSINVENNEPNRRALRELLFCTPGALQYLSGIILFEETLYQKTAAGKPFVDVMKEANVLPGIKVDKGTVELAGTDGETTTQGLDGLAQRCAQYYSAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDIKKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDAKKVAPEVVAEYTVTALQRTMPAAVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014907`
TK1151 ID	TkA02G384910
OH-1004 ID	LXL04_014907
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 82.096 / OH-1004 52.661 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014907

Location Chr03:59389535-59391222 (+)

Description Similar to FBA6: Fructose-bisphosphate aldolase 6, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36460`	Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis.	Regulation of plant cytosolic aldolase functions by redox-modifications.2011 · DOI: 10.1016/j.plaphy.2011.06.009 Transfer of a Redox-Signal through the Cytosol by Redox-Dependent Microcompartmentation of Glycolytic Enzymes at Mitochondria and Actin Cytoskeleton.2012 · DOI: 10.3389/fpls.2012.00284

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0402700`	Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis (By similarity).	No verified direct reference in this release
`Os01g0905800`	Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014907 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006094 gluconeogenesis Biological Process

GO:0006096 glycolytic process Biological Process

GO:0030388 fructose 1,6-bisphosphate metabolic process Biological Process

GO:0031930 mitochondria-nucleus signaling pathway Biological Process

GO:0048364 root development Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G36460

cam:101501462

dosa:Os01g0905800

dosa:Os05g0402700

osa:4338737

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.757

Rank 1 · LXL04_014907 · OH-1004

Nucleus0.275

Rank 2 · LXL04_014907 · OH-1004

Mitochondrion0.132

Rank 3 · LXL04_014907 · OH-1004

Cell membrane0.087

Rank 4 · LXL04_014907 · OH-1004

Endoplasmic reticulum0.058

Rank 5 · LXL04_014907 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00274.26Glycolytic11-357 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014907	`PF00274.26`	Glycolytic	11	357	2.2e-175	583.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJQ9`	Arabidopsis thaliana	Fructose-bisphosphate aldolase 6, cytosolic	83.799%	Swiss-Prot	strong database homology
`P17784`	Oryza sativa subsp. japonica	Fructose-bisphosphate aldolase 1, cytoplasmic	82.682%	Swiss-Prot	strong database homology
`Q5N725`	Oryza sativa subsp. japonica	Fructose-bisphosphate aldolase 3, cytoplasmic	81.844%	Swiss-Prot	strong database homology

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