LXL04_014862 | RubberDandelionOmics

Gene overview

LXL04_014862

Reference: OH-1004 Chr: Chr03 Coordinates: 58262900-58263788 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

558 bp · LXL04_014862|LXL04_014862|OH1004|cDNA

ATGGAATCCATAATGGCTAGGGCGCTGGAGTCCACTCTCAAATACTGGCTGAAATCATTCTCCAGAGATGAAGGACGCACTGTACAGCTCTCCAATATAGGTGCACATTTAATTTACAGGTTCAGCTCTGAAGATCCTTACTATGTACAGTCAATCGGTCCCCCGTTTCCATATTCTTCACCTTACGGTGTACCAAACTATGGACCAAATGGTGCTGGTAAAAAGTTTCAGAACAACAAGGTTCCGTATTTTCCTTGTAT...

CDS

Download CDS FASTA

558 bp · LXL04_014862|LXL04_014862|OH1004|CDS

ATGGAATCCATAATGGCTAGGGCGCTGGAGTCCACTCTCAAATACTGGCTGAAATCATTCTCCAGAGATGAAGGACGCACTGTACAGCTCTCCAATATAGGTGCACATTTAATTTACAGGTTCAGCTCTGAAGATCCTTACTATGTACAGTCAATCGGTCCCCCGTTTCCATATTCTTCACCTTACGGTGTACCAAACTATGGACCAAATGGTGCTGGTAAAAAGTTTCAGAACAACAAGGTTCCGTATTTTCCTTGTAT...

Protein

Download Protein FASTA

185 aa · LXL04_014862|LXL04_014862|OH1004|PROTEIN

MESIMARALESTLKYWLKSFSRDEGRTVQLSNIGAHLIYRFSSEDPYYVQSIGPPFPYSSPYGVPNYGPNGAGKKFQNNKVPYFPCIFSMNNECEYEDMSNSVTLGVAEEHIGIVVGRSGRNITEISQISGARIKISERGDFIYGTSDRKVAITGSQRAINVAKAMIMHKVASASSPPPVVTTEK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014862`
TK1151 ID	TkA01G628150
OH-1004 ID	LXL04_014862
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.500
Protein coverage (%)	TK1151 59.333 / OH-1004 45.946 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014862

Location Chr03:58262900-58263788 (+)

Description Similar to BTR1: Protein BTR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g04430`	Negative regulator of tomato mosaic virus (ToMV) multiplication, but has no effect on the multiplication of cucumber mosaic virus (CMV).	Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication.2008 · DOI: 10.1016/j.virol.2008.07.033

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014862 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006396 RNA processing Biological Process

GO:0008380 RNA splicing Biological Process

GO:0046719 regulation by virus of viral protein levels in host cell Biological Process

GO:0050684 regulation of mRNA processing Biological Process

GO:0051252 regulation of RNA metabolic process Biological Process

GO:0120163 negative regulation of cold-induced thermogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G04430

hsa:4857

hsa:4858

mmu:384569

mmu:664883

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.544

Rank 1 · LXL04_014862 · OH-1004

Cytoplasm0.486

Rank 2 · LXL04_014862 · OH-1004

Cell membrane0.060

Rank 3 · LXL04_014862 · OH-1004

Endoplasmic reticulum0.037

Rank 4 · LXL04_014862 · OH-1004

Mitochondrion0.034

Rank 5 · LXL04_014862 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00013.36KH_1103-168 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014862	`PF00013.36`	KH_1	103	168	1.5e-13	51.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZ82`	Arabidopsis thaliana	Protein BTR1	51.079%	Swiss-Prot	strong database homology

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