RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_014780
Reference: OH-1004 Chr: Chr03 Coordinates: 56896766-56921798 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

8103 bp · LXL04_014780|LXL04_014780|OH1004|cDNA

ATGATGTGTCTTTTGGAGAGCCATGATATGCTCGGTTTCATCGATGAAACATCAAAAAAACCCAAGAAAAAAGGCCGTCCTACAAAGGAGGCTGTTGTTAAAGGCAAGCTGTGGAAAAGATCGGACGCCCTTATAAAAGGATGGATATTCGGTTCGCTATGTGAAGATGTGATGTGTAATGTGATTGACCTCTCAACAGCTAATGATGTTTGGATAAAGCTAGAAACTATTTATAGTTCTCTTGAATCGGCTGCTCCCAC...

CDS

Download CDS FASTA

8103 bp · LXL04_014780|LXL04_014780|OH1004|CDS

ATGATGTGTCTTTTGGAGAGCCATGATATGCTCGGTTTCATCGATGAAACATCAAAAAAACCCAAGAAAAAAGGCCGTCCTACAAAGGAGGCTGTTGTTAAAGGCAAGCTGTGGAAAAGATCGGACGCCCTTATAAAAGGATGGATATTCGGTTCGCTATGTGAAGATGTGATGTGTAATGTGATTGACCTCTCAACAGCTAATGATGTTTGGATAAAGCTAGAAACTATTTATAGTTCTCTTGAATCGGCTGCTCCCAC...

Protein

Download Protein FASTA

2700 aa · LXL04_014780|LXL04_014780|OH1004|PROTEIN

MMCLLESHDMLGFIDETSKKPKKKGRPTKEAVVKGKLWKRSDALIKGWIFGSLCEDVMCNVIDLSTANDVWIKLETIYSSLESAAPTTSENVSQKEYPYPSHVNAANFVYIKLSGRTNYEVWQEQMMCLLESHDMVGFIDGTLKKPKKKDFPKKEAADMVVIKGKQWKRSDALIKGWIFGSLCEDVMCIVIGLSTANDVWIKLETIYSSLESAAPTTSENDQAKHLPLYRAILKDDWKKAEDIFKMDKDALMFKLNDDEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_014780
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_014780
LocationChr03:56896766-56921798 (+)
DescriptionSimilar to Transposon TX1 uncharacterized 149 kDa protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014780 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006974 DNA damage response Biological Process
GO:0010212 response to ionizing radiation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031297 replication fork processing Biological Process
GO:0031571 mitotic G1 DNA damage checkpoint signaling Biological Process
GO:0032197 retrotransposition Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:0090304 nucleic acid metabolic process Biological Process
GO:2000001 regulation of DNA damage checkpoint Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
hsa:55159
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.482
Rank 1 · LXL04_014780 · OH-1004
Nucleus0.295
Rank 2 · LXL04_014780 · OH-1004
Cell membrane0.239
Rank 3 · LXL04_014780 · OH-1004
Endoplasmic reticulum0.066
Rank 4 · LXL04_014780 · OH-1004
Lysosome / Vacuole0.043
Rank 5 · LXL04_014780 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223.15Retrotran_gag_21-82 aa
PF14244.13Retrotran_gag_3112-147 aa
PF14223.15Retrotran_gag_2126-211 aa
PF12796.14Ank_2255-320 aa
PF12796.14Ank_2263-354 aa
PF13962.12PGG681-793 aa
PF13639.13zf-RING_2992-1038 aa
PF23419.3WD40_RFWD31159-1470 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_014780PF14223.15Retrotran_gag_21821.4e-1971.2
LXL04_014780PF14244.13Retrotran_gag_31121471.2e-0835.3
LXL04_014780PF14223.15Retrotran_gag_21262111.4e-1971.2
LXL04_014780PF12796.14Ank_22553201.1e-1145.9
LXL04_014780PF12796.14Ank_22633541.1e-1145.9
LXL04_014780PF13962.12PGG6817937.1e-2484.6
LXL04_014780PF13639.13zf-RING_299210385.5e-0833.7
LXL04_014780PF23419.3WD40_RFWD3115914708e-2691.9
LXL04_014780PF00005.34ABC_tran155015841e-0526.8
LXL04_014780PF00078.33RVT_1199022392.3e-31109.9
LXL04_014780PF13966.12zf-RVT251525999.2e-1555.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser