LXL04_014755 | RubberDandelionOmics

Gene overview

LXL04_014755

Reference: OH-1004 Chr: Chr03 Coordinates: 56373344-56374807 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

834 bp · LXL04_014755|LXL04_014755|OH1004|cDNA

ATGGATGCCGTCATTGAGATCGAGGATCAACAACAGCTCATCAACGCCCTTCCAGATCTGTCGATCCATGTCCAGGGTTGTGATCCTGGGCAGGAGGAGAAGAACGAAGTGGTTTCTAGTAACGAAGAGAGTCGGCATCCGGAAACTTCATTAGCTGATGAAAATCATCATGGGGTTTGTGCAGTTTGTTTGAATAAAATCGCGTTACAGGAAACTGCCCTCGTAAAAGGTTGCGAGCATGCCTACTGTGTGACTTGCAT...

CDS

Download CDS FASTA

834 bp · LXL04_014755|LXL04_014755|OH1004|CDS

ATGGATGCCGTCATTGAGATCGAGGATCAACAACAGCTCATCAACGCCCTTCCAGATCTGTCGATCCATGTCCAGGGTTGTGATCCTGGGCAGGAGGAGAAGAACGAAGTGGTTTCTAGTAACGAAGAGAGTCGGCATCCGGAAACTTCATTAGCTGATGAAAATCATCATGGGGTTTGTGCAGTTTGTTTGAATAAAATCGCGTTACAGGAAACTGCCCTCGTAAAAGGTTGCGAGCATGCCTACTGTGTGACTTGCAT...

Protein

Download Protein FASTA

277 aa · LXL04_014755|LXL04_014755|OH1004|PROTEIN

MDAVIEIEDQQQLINALPDLSIHVQGCDPGQEEKNEVVSSNEESRHPETSLADENHHGVCAVCLNKIALQETALVKGCEHAYCVTCILRWATYKKEPTCPQCKNPFEFLNIHRSLDGSIHDYMFEESVCLLLRASWFHPLHIEPHTEPEDHITQDFFYSYDYEEEEDDEDLDEVYLGRSSNINIRIGNRRWGNNGFVRAGKQEARPVHQQPPNFQDSGGAGSSSREPKKKESGGGGGGAARDVAAVGRRAKRTLKREAAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014755`
TK1151 ID	TkA02G399450
OH-1004 ID	LXL04_014755
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_014755`
Location	Chr03:56373344-56374807 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014755` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000245 spliceosomal complex assembly Biological Process GO:0000375 RNA splicing, via transesterification reactions Biological Process GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0016604 nuclear body Cellular Component GO:0003723 RNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	cel:CELE_C32D5.10 hsa:9169 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.899

Rank 1 · LXL04_014755 · OH-1004

Cytoplasm0.174

Rank 2 · LXL04_014755 · OH-1004

Cell membrane0.045

Rank 3 · LXL04_014755 · OH-1004

Endoplasmic reticulum0.034

Rank 4 · LXL04_014755 · OH-1004

Plastid0.012

Rank 5 · LXL04_014755 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13639.13zf-RING_260-103 aa

PF00097.32zf-C3HC460-102 aa

PF13923.13zf-C3HC4_260-102 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014755	`PF13639.13`	zf-RING_2	60	103	2.3e-08	34.9
LXL04_014755	`PF00097.32`	zf-C3HC4	60	102	3.1e-06	27.7
LXL04_014755	`PF13923.13`	zf-C3HC4_2	60	102	6.8e-06	26.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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