LXL04_014128 | RubberDandelionOmics

Gene overview

LXL04_014128

Reference: OH-1004 Chr: Chr03 Coordinates: 42431420-42433525 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1365 bp · LXL04_014128|LXL04_014128|OH1004|cDNA

ATGGGTTCCCAAGAAGACGACCACATCGCCACCGTCTACGGCGAAGATCTAGACGAAGACGATGAGAGCGAAGACGAAGATCTAACCTTGCCCAATCAGAACGTcgatgaagatgatgttgatTTGGTTGATGACGAGGAAGAGGATGATTCCGTTTCCTCCGGCGTCGGTGAAGTCACCATCGCCGTAGCTGGCGATCCCAGCGCCAACACCACCGTTGCCGCTACACCAACGGCAGCAATTACTGGCACGATCAACGC...

CDS

Download CDS FASTA

1365 bp · LXL04_014128|LXL04_014128|OH1004|CDS

ATGGGTTCCCAAGAAGACGACCACATCGCCACCGTCTACGGCGAAGATCTAGACGAAGACGATGAGAGCGAAGACGAAGATCTAACCTTGCCCAATCAGAACGTCGATGAAGATGATGTTGATTTGGTTGATGACGAGGAAGAGGATGATTCCGTTTCCTCCGGCGTCGGTGAAGTCACCATCGCCGTAGCTGGCGATCCCAGCGCCAACACCACCGTTGCCGCTACACCAACGGCAGCAATTACTGGCACGATCAACGC...

Protein

Download Protein FASTA

454 aa · LXL04_014128|LXL04_014128|OH1004|PROTEIN

MGSQEDDHIATVYGEDLDEDDESEDEDLTLPNQNVDEDDVDLVDDEEEDDSVSSGVGEVTIAVAGDPSANTTVAATPTAAITGTINATPITRSDGALEQRKIVPLDESRRLFQRLWTDEDEIELLQGFLDYTNQRLVNNPFHHHHHHHHDTTAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRNVLSKISSGKEYVFKSAHDQITFDISCKIWSTEAALVSTPATADVGRFEDEEPNNPNHYPNPNLNLTFNLNEQNGNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014128`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014128

Location Chr03:42431420-42433525 (+)

Description Similar to At5g28040: Probable transcription factor At5g28040

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g28040`	Probable transcription factor At5g28040.	No verified direct reference in this release
`At3g04930`	Probable transcription factor At3g04930.	No verified direct reference in this release
`At4g01260`	Probable transcription factor At4g01260.	No verified direct reference in this release
`At4g00390`	Probable transcription factor At4g00390.	No verified direct reference in this release
`At1g11510`	Probable transcription factor At1g11510.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014128 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G11510

ath:AT3G04930

ath:AT4G00390

ath:AT4G01260

ath:AT5G28040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · LXL04_014128 · OH-1004

Cytoplasm0.071

Rank 2 · LXL04_014128 · OH-1004

Cell membrane0.018

Rank 3 · LXL04_014128 · OH-1004

Endoplasmic reticulum0.012

Rank 4 · LXL04_014128 · OH-1004

Plastid0.009

Rank 5 · LXL04_014128 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04504.21GeBP-like_DBD112-214 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014128	`PF04504.21`	GeBP-like_DBD	112	214	1.2e-28	100.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4K5T4`	Arabidopsis thaliana	Probable transcription factor At5g28040	41.256%	Swiss-Prot	moderate database homology
`Q9CAV7`	Arabidopsis thaliana	Probable transcription factor At3g04930	38.117%	Swiss-Prot	moderate database homology
`O04608`	Arabidopsis thaliana	Probable transcription factor At4g01260	34.574%	Swiss-Prot	weak database homology
`O23063`	Arabidopsis thaliana	Probable transcription factor At4g00390	37.500%	Swiss-Prot	weak database homology
`C0SUU6`	Arabidopsis thaliana	Probable transcription factor At1g11510	42.157%	Swiss-Prot	weak database homology

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