LXL04_014101 | RubberDandelionOmics

Gene overview

LXL04_014101

Reference: OH-1004 Chr: Chr03 Coordinates: 42068669-42071592 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1479 bp · LXL04_014101|LXL04_014101|OH1004|cDNA

ATGCTTCTTCTAGCCTTCGTCTTCTGTTTATTTTCGGTAGAAATCTCTCGCACAGCACCACTGCTCCAGCCTGGATACTATGCCAAATCCTGCCCAAATGCAGAGCTCATCGTTAGAGATGTGATGAAGAAGGCGATGATTAAAGATCCCAGAAATGGAGCTTCTGTTTTGCGTCTTCAATTCCATGATTGTTTCGTTAACGGATGTGATGGTTCATTGTTGTTGGATGATACTCCCGCCATGCTTGGAGAGAAGCTTTC...

CDS

Download CDS FASTA

1479 bp · LXL04_014101|LXL04_014101|OH1004|CDS

ATGCTTCTTCTAGCCTTCGTCTTCTGTTTATTTTCGGTAGAAATCTCTCGCACAGCACCACTGCTCCAGCCTGGATACTATGCCAAATCCTGCCCAAATGCAGAGCTCATCGTTAGAGATGTGATGAAGAAGGCGATGATTAAAGATCCCAGAAATGGAGCTTCTGTTTTGCGTCTTCAATTCCATGATTGTTTCGTTAACGGATGTGATGGTTCATTGTTGTTGGATGATACTCCCGCCATGCTTGGAGAGAAGCTTTC...

Protein

Download Protein FASTA

492 aa · LXL04_014101|LXL04_014101|OH1004|PROTEIN

MLLLAFVFCLFSVEISRTAPLLQPGYYAKSCPNAELIVRDVMKKAMIKDPRNGASVLRLQFHDCFVNGCDGSLLLDDTPAMLGEKLSLSNINSLRSYVVVDEIKEALESACPRTVSCADVIVIASRDAVVLSGGPEWEVKLGRKDSLTASQTDSDDIMPSTNSNASVLVDLFARFDLSVKDLVALSGSHSIGKGRCSSIVLRLYNQSGTGRPDPSIEPKFRQKLHNLCPLGGDGNVTSGLDSTPHVFDNQYFKDLVNGRG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014101`
TK1151 ID	TkA02G456550
OH-1004 ID	LXL04_014101
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	83.400
Protein coverage (%)	TK1151 94.493 / OH-1004 66.260 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_014101

Location Chr03:42068669-42071592 (-)

Description Similar to PER17: Peroxidase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22420`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g19890`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At2g18150`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g36430`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014101 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0051707 response to other organism Biological Process

GO:0080001 mucilage extrusion from seed coat Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004601 peroxidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G18150

ath:AT2G22420

ath:AT4G36430

ath:AT5G19890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.245

Rank 1 · LXL04_014101 · OH-1004

Cytoplasm0.165

Rank 2 · LXL04_014101 · OH-1004

Endoplasmic reticulum0.140

Rank 3 · LXL04_014101 · OH-1004

Plastid0.118

Rank 4 · LXL04_014101 · OH-1004

Extracellular0.106

Rank 5 · LXL04_014101 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase38-284 aa

PF13085.12Fer2_3387-457 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014101	`PF00141.29`	peroxidase	38	284	4.9e-77	259.6
LXL04_014101	`PF13085.12`	Fer2_3	387	457	8.5e-19	68.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJZ2`	Arabidopsis thaliana	Peroxidase 17	68.712%	Swiss-Prot	moderate database homology
`Q39034`	Arabidopsis thaliana	Peroxidase 59	46.296%	Swiss-Prot	moderate database homology
`Q9SI16`	Arabidopsis thaliana	Peroxidase 15	49.669%	Swiss-Prot	moderate database homology
`O23237`	Arabidopsis thaliana	Peroxidase 49	50.166%	Swiss-Prot	moderate database homology

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