LXL04_014084 | RubberDandelionOmics

Gene overview

LXL04_014084

Reference: OH-1004 Chr: Chr03 Coordinates: 41837965-41841199 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1497 bp · LXL04_014084|LXL04_014084|OH1004|cDNA

ATGGCGGCCAGCAAAGGTACTGGTGGTCGAGTCGAGGAACCATCGGTACTAGTACCCTTGTTGGATCATTCAGCTTCAAACAACGACTCGCTTCCAAAAAACCCAGACCAAGACCTCGATCTCCCATTCCGACATCGCTTCTTCATCGAATCCAAGAAGCTATGGCACATAGTCGGCCCCGCCATCTTCAGCCGCATAGCCTCCTACTCCATGTTTGTCATCACCCAAGCCTTCGCCGGCCATCTCGGCGATCTCGAACT...

CDS

Download CDS FASTA

1497 bp · LXL04_014084|LXL04_014084|OH1004|CDS

ATGGCGGCCAGCAAAGGTACTGGTGGTCGAGTCGAGGAACCATCGGTACTAGTACCCTTGTTGGATCATTCAGCTTCAAACAACGACTCGCTTCCAAAAAACCCAGACCAAGACCTCGATCTCCCATTCCGACATCGCTTCTTCATCGAATCCAAGAAGCTATGGCACATAGTCGGCCCCGCCATCTTCAGCCGCATAGCCTCCTACTCCATGTTTGTCATCACCCAAGCCTTCGCCGGCCATCTCGGCGATCTCGAACT...

Protein

Download Protein FASTA

498 aa · LXL04_014084|LXL04_014084|OH1004|PROTEIN

MAASKGTGGRVEEPSVLVPLLDHSASNNDSLPKNPDQDLDLPFRHRFFIESKKLWHIVGPAIFSRIASYSMFVITQAFAGHLGDLELAAISIATSVIVGFDFGLLLGMASALETLCGQAYGAKNYRMLGVYLQRSWIVLFLCCLLLLPLYIFASPVLKLLGQPADISELSGKVSMSLIPLHFSLCFQFPLQRFLQSQLKTYVIAWVSLGALVVHSVMSWLVVYRMQLGLVGTVVTLNFSWWLIVLGLFWYSVFGGCPETW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014084`
TK1151 ID	TkA02G349180
OH-1004 ID	LXL04_014084
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	85.300
Protein coverage (%)	TK1151 79.601 / OH-1004 72.289 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014084

Location Chr03:41837965-41841199 (+)

Description Similar to DTX27: Protein DETOXIFICATION 27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65380`	Protein DETOXIFICATION 27.	No verified direct reference in this release
`At5g44050`	Protein DETOXIFICATION 28.	No verified direct reference in this release
`At5g10420`	Protein DETOXIFICATION 26.	No verified direct reference in this release
`At1g47530`	Protein DETOXIFICATION 33.	No verified direct reference in this release
`At1g33110`	Protein DETOXIFICATION 21.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014084 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

GO:0042910 xenobiotic transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G33110

ath:AT1G47530

ath:AT5G10420

ath:AT5G44050

ath:AT5G65380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.443

Rank 1 · LXL04_014084 · OH-1004

Cell membrane0.288

Rank 2 · LXL04_014084 · OH-1004

Endoplasmic reticulum0.113

Rank 3 · LXL04_014084 · OH-1004

Golgi apparatus0.097

Rank 4 · LXL04_014084 · OH-1004

Cytoplasm0.091

Rank 5 · LXL04_014084 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01554.24MatE60-220 aa

PF01554.24MatE282-441 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014084	`PF01554.24`	MatE	60	220	2.1e-60	203.8
LXL04_014084	`PF01554.24`	MatE	282	441	2.1e-60	203.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FKQ1`	Arabidopsis thaliana	Protein DETOXIFICATION 27	71.983%	Swiss-Prot	strong database homology
`Q9FNC1`	Arabidopsis thaliana	Protein DETOXIFICATION 28	63.948%	Swiss-Prot	strong database homology
`Q1PDX9`	Arabidopsis thaliana	Protein DETOXIFICATION 26	62.500%	Swiss-Prot	strong database homology
`Q9SX83`	Arabidopsis thaliana	Protein DETOXIFICATION 33	49.057%	Swiss-Prot	moderate database homology
`Q8W488`	Arabidopsis thaliana	Protein DETOXIFICATION 21	47.599%	Swiss-Prot	moderate database homology

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