LXL04_014000 | RubberDandelionOmics

Gene overview

LXL04_014000

Reference: OH-1004 Chr: Chr03 Coordinates: 40350734-40351526 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · LXL04_014000|LXL04_014000|OH1004|cDNA

ATGATGCAGTTTCTATCAAGTGATGGCTACGAGTTCACTAACTGTTCCACTTTTATAAGAAACTTGGTATATGATAACAGCGGCGGCGAACTATCAGCAGTCGCGGAGGCGCAGTCGGTGGAGGAGAAGGCGGCGGCAGCTTGCAATAGACACAGCGAAGCTGAACGGAGACGGCGGAAGCGAATCAACGGCCACCTAGCCACCCTCCGCAGCCTCCTCCCCAGCACCATCAAAACGGACAAAGCTTCGTTACTGGCGGA...

CDS

Download CDS FASTA

693 bp · LXL04_014000|LXL04_014000|OH1004|CDS

ATGATGCAGTTTCTATCAAGTGATGGCTACGAGTTCACTAACTGTTCCACTTTTATAAGAAACTTGGTATATGATAACAGCGGCGGCGAACTATCAGCAGTCGCGGAGGCGCAGTCGGTGGAGGAGAAGGCGGCGGCAGCTTGCAATAGACACAGCGAAGCTGAACGGAGACGGCGGAAGCGAATCAACGGCCACCTAGCCACCCTCCGCAGCCTCCTCCCCAGCACCATCAAAACGGACAAAGCTTCGTTACTGGCGGA...

Protein

Download Protein FASTA

230 aa · LXL04_014000|LXL04_014000|OH1004|PROTEIN

MMQFLSSDGYEFTNCSTFIRNLVYDNSGGELSAVAEAQSVEEKAAAACNRHSEAERRRRKRINGHLATLRSLLPSTIKTDKASLLAEVVRRVKELKKMAAAELEPTAADQTDDDVIRNMIPSENDELELTYIGEDSCTKKITIKAVMCCEDRAELIVELTRALGLVRGKVVRMEIGTLGGRIKCVLWVQVMATTIEQGLHELRRALKVFMDRGAFLDLPRNKRPRISGSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014000`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_014000

Location Chr03:40350734-40351526 (-)

Description Similar to BHLH30: Transcription factor bHLH30

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68810`	Transcription factor bHLH30.	No verified direct reference in this release
`At2g41130`	Transcription factor bHLH106.	No verified direct reference in this release
`At3g25710`	Transcription factor required for MONOPTEROS-dependent root initiation in embryo.	MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor.2010 · DOI: 10.1038/nature08836
`At3g56770`	Putative transcription factor bHLH107.	No verified direct reference in this release
`At4g38070`	Transcription factor bHLH131.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014000 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0048364 root development Biological Process

GO:0080147 root hair cell development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G68810

ath:AT2G41130

ath:AT3G25710

ath:AT3G56770

ath:AT4G38070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_014000 · OH-1004

Cytoplasm0.078

Rank 2 · LXL04_014000 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_014000 · OH-1004

Endoplasmic reticulum0.015

Rank 4 · LXL04_014000 · OH-1004

Plastid0.011

Rank 5 · LXL04_014000 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00010.32HLH49-96 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014000	`PF00010.32`	HLH	49	96	4e-11	43.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S7Y1`	Arabidopsis thaliana	Transcription factor bHLH30	46.250%	Swiss-Prot	moderate database homology
`O80674`	Arabidopsis thaliana	Transcription factor bHLH106	40.957%	Swiss-Prot	moderate database homology
`Q9LS08`	Arabidopsis thaliana	Transcription factor AIG1	43.558%	Swiss-Prot	moderate database homology
`Q9LET0`	Arabidopsis thaliana	Putative transcription factor bHLH107	40.642%	Swiss-Prot	moderate database homology
`P0CB25`	Arabidopsis thaliana	Transcription factor bHLH131	41.139%	Swiss-Prot	moderate database homology

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