LXL04_013987 | RubberDandelionOmics

Gene overview

LXL04_013987

Reference: OH-1004 Chr: Chr03 Coordinates: 39967966-39971975 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2229 bp · LXL04_013987|LXL04_013987|OH1004|cDNA

ATGCATGACTACGGTTTGTTATTGACCCTCCCACCTCTTCCACAAAAGCTAAAACTAGAAGAACGTCCGCAAATATCTTCATCAAACTTGTCATTAGTAGTAGCCGGGACCACCATTGGCTACATACCAAACCGCCCGGAGTGGGCATCTCAAGTTGAAGAAGAAGATGCACCATATCTAAAATACATATTACATTACTGGGAAAATGAGTCACGACACAAATTATCACCCGTTGTTGACCGGTGGAAAATGACATTTGG...

CDS

Download CDS FASTA

2229 bp · LXL04_013987|LXL04_013987|OH1004|CDS

ATGCATGACTACGGTTTGTTATTGACCCTCCCACCTCTTCCACAAAAGCTAAAACTAGAAGAACGTCCGCAAATATCTTCATCAAACTTGTCATTAGTAGTAGCCGGGACCACCATTGGCTACATACCAAACCGCCCGGAGTGGGCATCTCAAGTTGAAGAAGAAGATGCACCATATCTAAAATACATATTACATTACTGGGAAAATGAGTCACGACACAAATTATCACCCGTTGTTGACCGGTGGAAAATGACATTTGG...

Protein

Download Protein FASTA

742 aa · LXL04_013987|LXL04_013987|OH1004|PROTEIN

MHDYGLLLTLPPLPQKLKLEERPQISSSNLSLVVAGTTIGYIPNRPEWASQVEEEDAPYLKYILHYWENESRHKLSPVVDRWKMTFGIKISIPYDDFSSPIKLNEKPTYPKYTTNHEHEPGGKEPVLMAACRSNGGDDIPIDGQAGDITNLNTTISTLRRQLLVTRYAVARTLLNGESVWGLATCRGYVSTPNCVACFDYAVAQLRVCGRGNGAHAFYNDCDVRYENNNFYPDANIRAGIVICGNTTSPQQSNFRKSVEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013987`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013987

Location Chr03:39967966-39971975 (-)

Description Similar to CRK3: Cysteine-rich receptor-like protein kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70530`	Cysteine-rich receptor-like protein kinase 3.	No verified direct reference in this release
`At1g70520`	Cysteine-rich receptor-like protein kinase 2.	No verified direct reference in this release
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At5g40380`	Cysteine-rich receptor-like protein kinase 42.	No verified direct reference in this release
`At1g19090`	Cysteine-rich receptor-like protein kinase 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013987 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0010193 response to ozone Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0052545 callose localization Biological Process

GO:0072593 reactive oxygen species metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G19090

ath:AT1G70520

ath:AT1G70530

ath:AT4G05200

ath:AT5G40380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.866

Rank 1 · LXL04_013987 · OH-1004

Cytoplasm0.081

Rank 2 · LXL04_013987 · OH-1004

Endoplasmic reticulum0.079

Rank 3 · LXL04_013987 · OH-1004

Nucleus0.051

Rank 4 · LXL04_013987 · OH-1004

Lysosome / Vacuole0.025

Rank 5 · LXL04_013987 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung149-227 aa

PF01657.23Stress-antifung243-338 aa

PF00069.32Pkinase426-695 aa

PF07714.24PK_Tyr_Ser-Thr429-697 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013987	`PF01657.23`	Stress-antifung	149	227	6.1e-24	85.3
LXL04_013987	`PF01657.23`	Stress-antifung	243	338	6.1e-24	85.3
LXL04_013987	`PF00069.32`	Pkinase	426	695	3.4e-42	145.4
LXL04_013987	`PF07714.24`	PK_Tyr_Ser-Thr	429	697	2.2e-46	159.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9CAL2`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 3	35.495%	Swiss-Prot	moderate database homology
`Q9CAL3`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 2	34.539%	Swiss-Prot	moderate database homology
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	35.636%	Swiss-Prot	moderate database homology
`Q9FNE1`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 42	34.735%	Swiss-Prot	moderate database homology
`Q9LMB9`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 1	35.240%	Swiss-Prot	moderate database homology

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