LXL04_013883 | RubberDandelionOmics

Gene overview

LXL04_013883

Reference: OH-1004 Chr: Chr03 Coordinates: 37390928-37394035 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1791 bp · LXL04_013883|LXL04_013883|OH1004|cDNA

ATGATGGTAAAGGCTCATCCCTCCCAGAAACTATACACCCGCATGAGGTTATGGGAGTTTCCGGATCAATACATCGTTGAACCCACTGATGGTTCTTCTGGTTCTTGTTTAGCCGTCAGTCGTGTTAATGGTTCCATGTCACTTGTTGATGAAGTTCCGCATTGTACCACGGTTCGTGTTCCAAAAATTCAGACGGTTTTTGGTGTTGTTGGGATGCTAAAGCTATTAGCAGGATCATATTTATTAGTGATTACGGACCG...

CDS

Download CDS FASTA

1791 bp · LXL04_013883|LXL04_013883|OH1004|CDS

ATGATGGTAAAGGCTCATCCCTCCCAGAAACTATACACCCGCATGAGGTTATGGGAGTTTCCGGATCAATACATCGTTGAACCCACTGATGGTTCTTCTGGTTCTTGTTTAGCCGTCAGTCGTGTTAATGGTTCCATGTCACTTGTTGATGAAGTTCCGCATTGTACCACGGTTCGTGTTCCAAAAATTCAGACGGTTTTTGGTGTTGTTGGGATGCTAAAGCTATTAGCAGGATCATATTTATTAGTGATTACGGACCG...

Protein

Download Protein FASTA

596 aa · LXL04_013883|LXL04_013883|OH1004|PROTEIN

MMVKAHPSQKLYTRMRLWEFPDQYIVEPTDGSSGSCLAVSRVNGSMSLVDEVPHCTTVRVPKIQTVFGVVGMLKLLAGSYLLVITDRESVGSYLGHPFFKVLSLKVFPCDHSLRNSPEEQKRMEADFSNLLKVAEKTHGLFFSYDVNITLSAQRLNDLGDESKLLPLWRQAEPRFLWNNYMLEVFIDSKLDPYMLPVIQGSFQTFQSAIGLDIIDVTLIARRCTRRTGTRLWRRGADNDGYVANFVESEQIIQLKGFTAS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013883`
TK1151 ID	TkA02G466600
OH-1004 ID	LXL04_013883
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_013883

Location Chr03:37390928-37394035 (+)

Description Similar to SAC7: Phosphoinositide phosphatase SAC7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51460`	May act as a phosphoinositide phosphatase that preferentially hydrolyzes PtdIns(4)P.	Three SAC1-like genes show overlapping patterns of expression in Arabidopsis but are remarkably silent during embryo development.2003 · DOI: 10.1046/j.1365-313x.2003.01720.x Root hair defective4 encodes a phosphatidylinositol-4-phosphate phosphatase required for proper root hair development in Arabidopsis thaliana.2008 · DOI: 10.1105/tpc.107.054304
`At5g66020`	May act as a phosphoinositide phosphatase that hydrolyzes PtdIns(3)P and PtdIns(4)P.	Three SAC1-like genes show overlapping patterns of expression in Arabidopsis but are remarkably silent during embryo development.2003 · DOI: 10.1046/j.1365-313x.2003.01720.x Dissecting the beta-aminobutyric acid-induced priming phenomenon in Arabidopsis.2005 · DOI: 10.1105/tpc.104.029728
`At3g51830`	May act as a phosphoinositide phosphatase that hydrolyzes PtdIns(3)P and PtdIns(4)P.	Three SAC1-like genes show overlapping patterns of expression in Arabidopsis but are remarkably silent during embryo development.2003 · DOI: 10.1046/j.1365-313x.2003.01720.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013883 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006661 phosphatidylinositol biosynthetic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0046856 phosphatidylinositol dephosphorylation Biological Process

GO:0048768 root hair cell tip growth Biological Process

GO:0098967 exocytic insertion of neurotransmitter receptor to postsynaptic membrane Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT3G51460

ath:AT3G51830

ath:AT5G66020

pon:100172954

xla:444578

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.569

Rank 1 · LXL04_013883 · OH-1004

Golgi apparatus0.216

Rank 2 · LXL04_013883 · OH-1004

Cytoplasm0.197

Rank 3 · LXL04_013883 · OH-1004

Nucleus0.114

Rank 4 · LXL04_013883 · OH-1004

Lysosome / Vacuole0.079

Rank 5 · LXL04_013883 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02383.24Syja_N67-352 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013883	`PF02383.24`	Syja_N	67	352	4.3e-77	260.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5G5`	Arabidopsis thaliana	Phosphoinositide phosphatase SAC7	71.721%	Swiss-Prot	strong database homology
`Q7X911`	Arabidopsis thaliana	Phosphoinositide phosphatase SAC6	71.331%	Swiss-Prot	strong database homology
`Q96328`	Arabidopsis thaliana	Phosphoinositide phosphatase SAC8	44.881%	Swiss-Prot	moderate database homology

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