LXL04_013856 | RubberDandelionOmics

Gene overview

LXL04_013856

Reference: OH-1004 Chr: Chr03 Coordinates: 37027452-37030517 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2461 bp · LXL04_013856|LXL04_013856|OH1004|cDNA

ATGATCCCTCTCGCCCTTCACTTCCATTCCAAATTCCTCTTCAACAAAATCTGCAAACCGTTTCCTCTTCgtttcttcatcttttcagcGAGAAAAAAAGGTAAACAAAAGCTTCGATCTTGCCATCATGGACGATACAACAGAATTATGTCCTGAAAACGATACGATGAACCCAGCCTTGACGATGACCACACAGGTCTCCGCCATTTTGGTTCTCTCTCATGTTTTTCAGATTTTCCTCAAACCCTTGGGCCAACCTG...

CDS

Download CDS FASTA

2334 bp · LXL04_013856|LXL04_013856|OH1004|CDS

ATGGACGATACAACAGAATTATGTCCTGAAAACGATACGATGAACCCAGCCTTGACGATGACCACACAGGTCTCCGCCATTTTGGTTCTCTCTCATGTTTTTCAGATTTTCCTCAAACCCTTGGGCCAACCTGCCCCCCTTGCTCAGATCCTCGCGGGATTCGTGCTAGGTCCATCAGGTTTATCGAGATCACCAGCAATCCACGTCTTCTTCTTCCAAAATTTTGCAGTCGATTTCTACGAAAGCATGGCGTTATACTG...

Protein

Download Protein FASTA

777 aa · LXL04_013856|LXL04_013856|OH1004|PROTEIN

MDDTTELCPENDTMNPALTMTTQVSAILVLSHVFQIFLKPLGQPAPLAQILAGFVLGPSGLSRSPAIHVFFFQNFAVDFYESMALYCRISIMFLMGLEMDIPYLMRNLRPASIIACCGCLTCTIFAAAISFFVYEETGSRGSRFTLALVITVILASTASPIVFRLAADLKFATSDIGRLAISASLIGDMYAVFILVIISGEKHKRTVNGWALMAFCSLLLLVGIIIFTTHLVNWLNRRNRNHKNLQAVEVMLLCSVILVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013856`
TK1151 ID	TkA02G467510
OH-1004 ID	LXL04_013856
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 94.872 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_013856

Location Chr03:37027452-37030517 (-)

Description Similar to CHX1: Cation/H(+) antiporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16380`	May operate as a cation/H(+) antiporter.	No verified direct reference in this release
`At1g79400`	May operate as a cation/H(+) antiporter.	No verified direct reference in this release
`At2g13620`	May operate as a cation/H(+) antiporter.	No verified direct reference in this release
`At4g23700`	Operates as a K(+)/H(+) antiporter that controls K(+) acquisition and homeostasis.	Characterization of AtCHX17, a member of the cation/H+ exchangers, CHX family, from Arabidopsis thaliana suggests a role in K+ homeostasis.2004 · DOI: 10.1111/j.1365-313x.2004.02177.x Arabidopsis thaliana CHX17 gene complements the kha1 deletion phenotypes in Saccharomyces cerevisiae.2006 · DOI: 10.1002/yea.1424
`At5g41610`	May operate as a cation/H(+) antiporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013856 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0006813 potassium ion transport Biological Process

GO:0006885 regulation of pH Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005770 late endosome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0016020 membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G16380

ath:AT1G79400

ath:AT2G13620

ath:AT4G23700

ath:AT5G41610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.735

Rank 1 · LXL04_013856 · OH-1004

Endoplasmic reticulum0.128

Rank 2 · LXL04_013856 · OH-1004

Lysosome / Vacuole0.088

Rank 3 · LXL04_013856 · OH-1004

Cytoplasm0.074

Rank 4 · LXL04_013856 · OH-1004

Golgi apparatus0.041

Rank 5 · LXL04_013856 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00999.27Na_H_Exchanger30-414 aa

PF23256.2CHX17_2nd470-599 aa

PF23259.2CHX17_C614-774 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013856	`PF00999.27`	Na_H_Exchanger	30	414	4.2e-43	148.4
LXL04_013856	`PF23256.2`	CHX17_2nd	470	599	1.3e-33	116.5
LXL04_013856	`PF23259.2`	CHX17_C	614	774	2e-34	119.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SA37`	Arabidopsis thaliana	Cation/H(+) antiporter 1	38.714%	Swiss-Prot	moderate database homology
`Q9SAK8`	Arabidopsis thaliana	Cation/H(+) antiporter 2	38.000%	Swiss-Prot	moderate database homology
`Q9SIT5`	Arabidopsis thaliana	Cation/H(+) antiporter 15	30.499%	Swiss-Prot	moderate database homology
`Q9SUQ7`	Arabidopsis thaliana	Cation/H(+) antiporter 17	29.096%	Swiss-Prot	weak database homology
`Q9FFR9`	Arabidopsis thaliana	Cation/H(+) antiporter 18	29.096%	Swiss-Prot	weak database homology

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