LXL04_013816 | RubberDandelionOmics

Gene overview

LXL04_013816

Reference: OH-1004 Chr: Chr03 Coordinates: 36336677-36336985 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

309 bp · LXL04_013816|LXL04_013816|OH1004|cDNA

ATGGGTCTTATTAGAAGATCTCACAACAAACAAATACAAGCAATAGCCCTCAAGAGAATCGCCAAGAAAGGCTCAACTATTGAAGATGACAATGGCTATCTAAGTGATGTCCCCAAAGGACACTTTGTAGTGTACGTTGGAGAAAGAAAAAGCAGATACGTCCTCCCGATATCATGCCTACATGACATAGGGTTCCAATTCCTGTTACGTCAAGCCGAGGAAGAGTTTGGGTTTAACCTTGACATGGGGTTGACCATTCC...

CDS

Download CDS FASTA

309 bp · LXL04_013816|LXL04_013816|OH1004|CDS

ATGGGTCTTATTAGAAGATCTCACAACAAACAAATACAAGCAATAGCCCTCAAGAGAATCGCCAAGAAAGGCTCAACTATTGAAGATGACAATGGCTATCTAAGTGATGTCCCCAAAGGACACTTTGTAGTGTACGTTGGAGAAAGAAAAAGCAGATACGTCCTCCCGATATCATGCCTACATGACATAGGGTTCCAATTCCTGTTACGTCAAGCCGAGGAAGAGTTTGGGTTTAACCTTGACATGGGGTTGACCATTCC...

Protein

Download Protein FASTA

102 aa · LXL04_013816|LXL04_013816|OH1004|PROTEIN

MGLIRRSHNKQIQAIALKRIAKKGSTIEDDNGYLSDVPKGHFVVYVGERKSRYVLPISCLHDIGFQFLLRQAEEEFGFNLDMGLTIPCLEQEFLSIFSLNHH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013816`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013816

Location Chr03:36336677-36336985 (+)

Description Similar to Auxin-responsive protein SAUR50

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75580`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	No verified direct reference in this release
`At2g21220`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	No verified direct reference in this release
`At2g18010`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture.2017 · DOI: 10.1093/jxb/erx184 Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade.2017 · DOI: 10.1186/s12870-017-1210-4
`At4g36110`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion.	Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana.2019 · DOI: 10.1186/s12864-019-5933-5

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013816 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009639 response to red or far red light Biological Process

GO:0009641 shade avoidance Biological Process

GO:0009642 response to light intensity Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0010202 response to low fluence red light stimulus Biological Process

GO:0051510 regulation of unidimensional cell growth Biological Process

GO:0060560 developmental growth involved in morphogenesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G75580

ath:AT2G18010

ath:AT2G21220

ath:AT4G36110

han:110918162

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.601

Rank 1 · LXL04_013816 · OH-1004

Nucleus0.365

Rank 2 · LXL04_013816 · OH-1004

Cell membrane0.157

Rank 3 · LXL04_013816 · OH-1004

Endoplasmic reticulum0.072

Rank 4 · LXL04_013816 · OH-1004

Plastid0.047

Rank 5 · LXL04_013816 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02519.21Auxin_inducible14-98 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013816	`PF02519.21`	Auxin_inducible	14	98	3e-19	69.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LR00`	Arabidopsis thaliana	Protein SMALL AUXIN UP-REGULATED RNA 51	52.427%	Swiss-Prot	strong database homology
`Q9SIG9`	Arabidopsis thaliana	Protein SMALL AUXIN UP-REGULATED RNA 12	53.465%	Swiss-Prot	strong database homology
`Q9SL45`	Arabidopsis thaliana	Protein SMALL AUXIN UP-REGULATED RNA 10	49.107%	Swiss-Prot	moderate database homology
`O65648`	Arabidopsis thaliana	Protein SMALL AUXIN UP-REGULATED RNA 9	52.000%	Swiss-Prot	strong database homology

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