LXL04_013811 | RubberDandelionOmics

Gene overview

LXL04_013811

Reference: OH-1004 Chr: Chr03 Coordinates: 36259807-36263793 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2868 bp · LXL04_013811|LXL04_013811|OH1004|cDNA

ATGGGGGAAAACGGTGGTAGTGGAGGAGGGGGGACGCGATCAGGGGACAGTGGTACCCGCCATGACGAGAGGATTTTTGTGTCTGTGCGGCTGCGACCTTTGAATGGAAGAGAAATTGTCACGAGCGATGTGTCTGATTGGGAATGTATCGGTCAAAACACAATCGCTTACAAGAATGGAAGCCTTGGTGTTCCGGAGAGATCCATGTACCCGTCGGCATATACATTCGACAGGGTTTTTGGCTACGATTGCTCCACACG...

CDS

Download CDS FASTA

2868 bp · LXL04_013811|LXL04_013811|OH1004|CDS

ATGGGGGAAAACGGTGGTAGTGGAGGAGGGGGGACGCGATCAGGGGACAGTGGTACCCGCCATGACGAGAGGATTTTTGTGTCTGTGCGGCTGCGACCTTTGAATGGAAGAGAAATTGTCACGAGCGATGTGTCTGATTGGGAATGTATCGGTCAAAACACAATCGCTTACAAGAATGGAAGCCTTGGTGTTCCGGAGAGATCCATGTACCCGTCGGCATATACATTCGACAGGGTTTTTGGCTACGATTGCTCCACACG...

Protein

Download Protein FASTA

955 aa · LXL04_013811|LXL04_013811|OH1004|PROTEIN

MGENGGSGGGGTRSGDSGTRHDERIFVSVRLRPLNGREIVTSDVSDWECIGQNTIAYKNGSLGVPERSMYPSAYTFDRVFGYDCSTRQVYQDGAKDVVLSVVGGINASIFAYGQTSSGKTFTMTGITEYTLADIYDYVQKHPERDFHLKFSAMEIYNESVRDLLSSDGYPLRLLDDPERGTIVENLTDESIRDWDHMMELLSICEAQRQSGETSLNETSSRSHQIIRLTIESTPSNYLGRDSATTLVSTVNFVDLAGSER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013811`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013811

Location Chr03:36259807-36263793 (+)

Description Similar to KIN7E: Kinesin-like protein KIN-7E

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21300`	Kinesin-like protein KIN-7E.	No verified direct reference in this release
`At5g66310`	Kinesin-like protein KIN-7H.	No verified direct reference in this release
`At3g51150`	Kinesin-like protein KIN-7G.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0538800`	Binds ATP/ADP in vitro.	No verified direct reference in this release
`Os08g0547500`	Kinesin-like protein KIN-7H.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013811 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT2G21300

ath:AT3G51150

ath:AT5G66310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.621

Rank 1 · LXL04_013811 · OH-1004

Nucleus0.282

Rank 2 · LXL04_013811 · OH-1004

Cell membrane0.174

Rank 3 · LXL04_013811 · OH-1004

Golgi apparatus0.060

Rank 4 · LXL04_013811 · OH-1004

Lysosome / Vacuole0.050

Rank 5 · LXL04_013811 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225.30Kinesin30-349 aa

PF16796.12Microtub_bd65-164 aa

PF11995.14DUF3490775-935 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013811	`PF00225.30`	Kinesin	30	349	6.8e-98	328.4
LXL04_013811	`PF16796.12`	Microtub_bd	65	164	7.9e-19	68.8
LXL04_013811	`PF11995.14`	DUF3490	775	935	3.9e-69	232.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IGL2`	Arabidopsis thaliana	Kinesin-like protein KIN-7E	44.989%	Swiss-Prot	moderate database homology
`F4JZ68`	Arabidopsis thaliana	Kinesin-like protein KIN-7H	57.388%	Swiss-Prot	moderate database homology
`F4J394`	Arabidopsis thaliana	Kinesin-like protein KIN-7G	67.483%	Swiss-Prot	weak database homology
`Q7X7H4`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7F	57.904%	Swiss-Prot	moderate database homology
`Q6Z9D2`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7H	70.343%	Swiss-Prot	weak database homology

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