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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_013781
Reference: OH-1004 Chr: Chr03 Coordinates: 35939560-35942067 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2508 bp · LXL04_013781|LXL04_013781|OH1004|cDNA

ATGGAAAATTATGACCAACAGCAGGGTCAACACACCGACAAGGGAGTGGAAGGAAATGAGAAGAAAGGAATAATGGAGAAAATAATGGAGCGATTACCTGGTGGTGGTGATCAGAAGACCAACACAACCACTATTGGCGGTGGTAAAGGTGCATATGAGAAAGTTGAAGGACATGAAAATAAAGGAATGATGGAGATAATAAAGGAGAAGCTATGGGGTGGTGGTGAGCAGAAGGCCTCAACTACGACTACCGTGAATGG...

CDS

Download CDS FASTA

2508 bp · LXL04_013781|LXL04_013781|OH1004|CDS

ATGGAAAATTATGACCAACAGCAGGGTCAACACACCGACAAGGGAGTGGAAGGAAATGAGAAGAAAGGAATAATGGAGAAAATAATGGAGCGATTACCTGGTGGTGGTGATCAGAAGACCAACACAACCACTATTGGCGGTGGTAAAGGTGCATATGAGAAAGTTGAAGGACATGAAAATAAAGGAATGATGGAGATAATAAAGGAGAAGCTATGGGGTGGTGGTGAGCAGAAGGCCTCAACTACGACTACCGTGAATGG...

Protein

Download Protein FASTA

835 aa · LXL04_013781|LXL04_013781|OH1004|PROTEIN

MENYDQQQGQHTDKGVEGNEKKGIMEKIMERLPGGGDQKTNTTTIGGGKGAYEKVEGHENKGMMEIIKEKLWGGGEQKASTTTTVNGGRGAYDGVEGNEKNEITENIKKILPGESERKPSTTTTVGGGGGAYEGIEGHEKKGMMEKIKEKLPRESEQKTSTTATVGGGGGAYEGIEGHEKMGITEKKNEKLSGGGEQKASTTTTVGAGRGAYEGVEGHETKGMMENIKEKLPGRSEQKTSTTKNIGGDRGVYEGIEGHEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_013781
TK1151 IDTkA02G471850
OH-1004 IDLXL04_013781
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)92.900
Protein coverage (%)TK1151 15.315 / OH-1004 10.180
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_013781
LocationChr03:35939560-35942067 (+)
DescriptionSimilar to CS120: Cold-shock protein CS120
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g50970 Dehydrin Xero 2. No verified direct reference in this release
At1g20440 Dehydrin COR47. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013781 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009414 response to water deprivation Biological Process
GO:0009631 cold acclimation Biological Process
GO:0009737 response to abscisic acid Biological Process
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.708
Rank 1 · LXL04_013781 · OH-1004
Nucleus0.157
Rank 2 · LXL04_013781 · OH-1004
Cell membrane0.149
Rank 3 · LXL04_013781 · OH-1004
Mitochondrion0.091
Rank 4 · LXL04_013781 · OH-1004
Extracellular0.060
Rank 5 · LXL04_013781 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00257.25Dehydrin13-73 aa
PF00257.25Dehydrin93-152 aa
PF00257.25Dehydrin174-234 aa
PF00257.25Dehydrin254-311 aa
PF00257.25Dehydrin294-352 aa
PF00257.25Dehydrin374-434 aa
PF00257.25Dehydrin413-472 aa
PF00257.25Dehydrin494-554 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_013781PF00257.25Dehydrin13732.4e-90301.7
LXL04_013781PF00257.25Dehydrin931522.4e-90301.7
LXL04_013781PF00257.25Dehydrin1742342.4e-90301.7
LXL04_013781PF00257.25Dehydrin2543112.4e-90301.7
LXL04_013781PF00257.25Dehydrin2943522.4e-90301.7
LXL04_013781PF00257.25Dehydrin3744342.4e-90301.7
LXL04_013781PF00257.25Dehydrin4134722.4e-90301.7
LXL04_013781PF00257.25Dehydrin4945542.4e-90301.7
LXL04_013781PF00257.25Dehydrin5746312.4e-90301.7
LXL04_013781PF00257.25Dehydrin6366722.4e-90301.7
LXL04_013781PF00257.25Dehydrin6947532.4e-90301.7
LXL04_013781PF00257.25Dehydrin7698342.4e-90301.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P42758Arabidopsis thalianaDehydrin Xero 232.857%Swiss-Protweak database homology
P31168Arabidopsis thalianaDehydrin COR4738.261%Swiss-Protweak database homology

JBrowse

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