LXL04_013382 | RubberDandelionOmics

Gene overview

LXL04_013382

Reference: OH-1004 Chr: Chr03 Coordinates: 28863685-28866892 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2308 bp · LXL04_013382|LXL04_013382|OH1004|cDNA

TGGTCATTTCATCGATCTCTGCCAGCTAATAACCTAAAATATGAAGTTCGGGAAGGAATTTGCTTCACAGATGGTGCCGGAATGGCAGCCAGCATACATGAACTACAACCACCTCAAGATTCTCATCAAAGAAATCTTGATTTTCCGGCGATTACAGCGGGCCGAATCAACCCCAGGGTATCAGGCAAACCCACCACTGCCATCAAAACGGACATCTCGGAAACGAAAGGTGGCTCTTCACAGAGCCTTCAATGGAATAA...

CDS

Download CDS FASTA

2268 bp · LXL04_013382|LXL04_013382|OH1004|CDS

ATGAAGTTCGGGAAGGAATTTGCTTCACAGATGGTGCCGGAATGGCAGCCAGCATACATGAACTACAACCACCTCAAGATTCTCATCAAAGAAATCTTGATTTTCCGGCGATTACAGCGGGCCGAATCAACCCCAGGGTATCAGGCAAACCCACCACTGCCATCAAAACGGACATCTCGGAAACGAAAGGTGGCTCTTCACAGAGCCTTCAATGGAATAACAAAAATCAACTCCAATCGAATGGATAAAGATGACGAAGT...

Protein

Download Protein FASTA

755 aa · LXL04_013382|LXL04_013382|OH1004|PROTEIN

MKFGKEFASQMVPEWQPAYMNYNHLKILIKEILIFRRLQRAESTPGYQANPPLPSKRTSRKRKVALHRAFNGITKINSNRMDKDDEVILVSAMQESEENYRTVFLRSSEDPGESELGFFKKLDDEFNKVIEFYKSKVEDEMVMEAEELSKQMNALIALRIKVEDPIFCSSSPMFSSRFTNEHISDVIQETKTHGESKMGSGRMNKEHEMVSLDVLNDVKINVLPETPRSSLKNAFSSSKLNFSFSNKELKNAERKLKQVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013382`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013382

Location Chr03:28863685-28866892 (-)

Description Similar to PHO1-H9: Phosphate transporter PHO1 homolog 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g29060`	May transport inorganic phosphate (Pi).	No verified direct reference in this release
`At1g26730`	May transport inorganic phosphate (Pi).	No verified direct reference in this release
`At1g35350`	May transport inorganic phosphate (Pi).	No verified direct reference in this release
`At1g14040`	May transport inorganic phosphate (Pi).	No verified direct reference in this release
`At2g03240`	May transport inorganic phosphate (Pi).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013382 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006817 phosphate ion transport Biological Process

GO:0006882 intracellular zinc ion homeostasis Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0055062 phosphate ion homeostasis Biological Process

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0000822 inositol hexakisphosphate binding Molecular Function

GO:0005315 phosphate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G14040

ath:AT1G26730

ath:AT1G35350

ath:AT2G03240

ath:AT3G29060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.637

Rank 1 · LXL04_013382 · OH-1004

Endoplasmic reticulum0.176

Rank 2 · LXL04_013382 · OH-1004

Lysosome / Vacuole0.122

Rank 3 · LXL04_013382 · OH-1004

Cytoplasm0.100

Rank 4 · LXL04_013382 · OH-1004

Golgi apparatus0.069

Rank 5 · LXL04_013382 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03105.25SPX1-304 aa

PF03124.21EXS393-731 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013382	`PF03105.25`	SPX	1	304	1.8e-63	216.4
LXL04_013382	`PF03124.21`	EXS	393	731	2.3e-99	333.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LJW0`	Arabidopsis thaliana	Phosphate transporter PHO1 homolog 9	49.751%	Swiss-Prot	moderate database homology
`Q6R8G3`	Arabidopsis thaliana	Phosphate transporter PHO1 homolog 7	51.953%	Swiss-Prot	strong database homology
`Q6R8G2`	Arabidopsis thaliana	Phosphate transporter PHO1 homolog 8	51.299%	Swiss-Prot	strong database homology
`Q6R8G7`	Arabidopsis thaliana	Phosphate transporter PHO1 homolog 3	48.242%	Swiss-Prot	moderate database homology
`Q6R8G5`	Arabidopsis thaliana	Phosphate transporter PHO1 homolog 5	47.262%	Swiss-Prot	moderate database homology

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