LXL04_012949 | RubberDandelionOmics

Gene overview

LXL04_012949

Reference: OH-1004 Chr: Chr03 Coordinates: 21457057-21459965 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1106 bp · LXL04_012949|LXL04_012949|OH1004|cDNA

ACGATACTTGAATAGAGATGGAGCCTGGCAATGGGGTTCATACGGAAGATGAAAACGGTGTCATAAACGCGGTAGATCAAGAGACCTCGAATGAAGTTTCGGAAGATCTCAATTCATCAAAACTGGAAGTGAGTGAATCTTCCGAGAATGTTAATGATACGAAAGTCCCAAATTCCATTAAGGTTACTACTAACGGAGGTACATCAAAGAACAATAAGGCGACCAAAAATGGCTCTAAAGGAACCATATTGTCTCGTAAG...

CDS

Download CDS FASTA

1089 bp · LXL04_012949|LXL04_012949|OH1004|CDS

ATGGAGCCTGGCAATGGGGTTCATACGGAAGATGAAAACGGTGTCATAAACGCGGTAGATCAAGAGACCTCGAATGAAGTTTCGGAAGATCTCAATTCATCAAAACTGGAAGTGAGTGAATCTTCCGAGAATGTTAATGATACGAAAGTCCCAAATTCCATTAAGGTTACTACTAACGGAGGTACATCAAAGAACAATAAGGCGACCAAAAATGGCTCTAAAGGAACCATATTGTCTCGTAAGCCAAAACCCCATCTAAC...

Protein

Download Protein FASTA

362 aa · LXL04_012949|LXL04_012949|OH1004|PROTEIN

MEPGNGVHTEDENGVINAVDQETSNEVSEDLNSSKLEVSESSENVNDTKVPNSIKVTTNGGTSKNNKATKNGSKGTILSRKPKPHLTQSLSFPSKPQNPNSMRASTDGHPGKQPATLSNGNATNPPANRRASTGVKTKEMNSSTDATSSRRATLDSIRVSRPKKSVTSEDASEGQHKNSVIGFSSRLEERAEKRKEFFSKIEEKIHAKEAEKTNLQEKSKESQEAEIKQLRKSLMFKAAPMPKFYKEPPPKVDLKKIPTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012949`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012949

Location Chr03:21457057-21459965 (-)

Description Similar to WDL4: Protein WVD2-like 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35880`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	No verified direct reference in this release
`At2g25480`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	No verified direct reference in this release
`At4g32330`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	No verified direct reference in this release
`At3g23090`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	Light-regulated hypocotyl elongation involves proteasome-dependent degradation of the microtubule regulatory protein WDL3 in Arabidopsis.2013 · DOI: 10.1105/tpc.113.112789
`At5g28646`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in Arabidopsis.2003 · DOI: 10.1104/pp.015966 WVD2 is a novel microtubule-associated protein in Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2006.03015.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012949 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0001578 microtubule bundle formation Biological Process

GO:0007163 establishment or maintenance of cell polarity Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010091 trichome branching Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0051511 negative regulation of unidimensional cell growth Biological Process

GO:0071369 cellular response to ethylene stimulus Biological Process

GO:0072657 protein localization to membrane Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT2G25480

ath:AT2G35880

ath:AT3G23090

ath:AT4G32330

ath:AT5G28646

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.720

Rank 1 · LXL04_012949 · OH-1004

Nucleus0.280

Rank 2 · LXL04_012949 · OH-1004

Cell membrane0.136

Rank 3 · LXL04_012949 · OH-1004

Endoplasmic reticulum0.041

Rank 4 · LXL04_012949 · OH-1004

Golgi apparatus0.025

Rank 5 · LXL04_012949 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06886.17TPX2186-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012949	`PF06886.17`	TPX2	186	253	1.6e-23	83.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJ62`	Arabidopsis thaliana	Protein WVD2-like 4	54.822%	Swiss-Prot	moderate database homology
`Q0WSZ8`	Arabidopsis thaliana	Protein WVD2-like 6	56.463%	Swiss-Prot	weak database homology
`Q94C48`	Arabidopsis thaliana	Protein WVD2-like 5	53.846%	Swiss-Prot	weak database homology
`Q84WL6`	Arabidopsis thaliana	Protein WVD2-like 3	66.667%	Swiss-Prot	weak database homology
`Q84ZT9`	Arabidopsis thaliana	Protein WAVE-DAMPENED 2	60.714%	Swiss-Prot	weak database homology

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