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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_012926
Reference: OH-1004 Chr: Chr03 Coordinates: 20914111-20915724 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1614 bp · LXL04_012926|LXL04_012926|OH1004|cDNA

ATGGATAGATTGATCAGTTTAGAGCCATCAAACACGGTTGTGATACGAATCGAACACGGTCAAAAATGTTCCGGTGAGCTCACTTTGAAAAACGTGATGTACACCATGCCTGTGGCTTTCCGGTTGCAACCGGTCAACAAGGCTCGGTACACGGTCAAACCACAATCCGGGATCATATCTCCGTTAACAACTCTTACGGTTGAGATCACTTACGACTTCCATCAAAACTCAAGTCTCCCTACTTCGGTCCCTTACTGTGA...

CDS

Download CDS FASTA

1614 bp · LXL04_012926|LXL04_012926|OH1004|CDS

ATGGATAGATTGATCAGTTTAGAGCCATCAAACACGGTTGTGATACGAATCGAACACGGTCAAAAATGTTCCGGTGAGCTCACTTTGAAAAACGTGATGTACACCATGCCTGTGGCTTTCCGGTTGCAACCGGTCAACAAGGCTCGGTACACGGTCAAACCACAATCCGGGATCATATCTCCGTTAACAACTCTTACGGTTGAGATCACTTACGACTTCCATCAAAACTCAAGTCTCCCTACTTCGGTCCCTTACTGTGA...

Protein

Download Protein FASTA

537 aa · LXL04_012926|LXL04_012926|OH1004|PROTEIN

MDRLISLEPSNTVVIRIEHGQKCSGELTLKNVMYTMPVAFRLQPVNKARYTVKPQSGIISPLTTLTVEITYDFHQNSSLPTSVPYCDDSFLLHSVVVPGAAMKNPSSTHDSVPNDWFTARKKQVFVDSGIRVMFVGSVVMASLVKNGSIDEIRDVLEKGDPNWRAVDSLDNEGQPLLHLAIGQSRPDLVQLLLEFEPDLEARNMLGLTPLEAASALGEGLIVELLLAHRASTARSETSTWGAIHLAAGGGHVDVLRLLLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_012926
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_012926
LocationChr03:20914111-20915724 (+)
DescriptionSimilar to VPY: Protein VAPYRIN
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012926 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0009609 response to symbiotic bacterium Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0009877 nodulation Biological Process
GO:0010247 detection of phosphate ion Biological Process
GO:0015969 guanosine tetraphosphate metabolic process Biological Process
GO:0036377 arbuscular mycorrhizal association Biological Process
GO:0085020 protein K6-linked ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
mtr:11415982
mtr:25495843
rfe:RF_0381
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.489
Rank 1 · LXL04_012926 · OH-1004
Nucleus0.309
Rank 2 · LXL04_012926 · OH-1004
Cell membrane0.154
Rank 3 · LXL04_012926 · OH-1004
Golgi apparatus0.072
Rank 4 · LXL04_012926 · OH-1004
Mitochondrion0.064
Rank 5 · LXL04_012926 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00635.33Motile_Sperm5-108 aa
PF12796.14Ank_2145-230 aa
PF13857.13Ank_5165-211 aa
PF12796.14Ank_2221-302 aa
PF00023.37Ank242-270 aa
PF13857.13Ank_5242-279 aa
PF13637.13Ank_4243-292 aa
PF13857.13Ank_5263-313 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_012926PF00635.33Motile_Sperm51082.3e-0937.8
LXL04_012926PF12796.14Ank_21452305e-60200.8
LXL04_012926PF13857.13Ank_51652115.1e-45151.7
LXL04_012926PF12796.14Ank_22213025e-60200.8
LXL04_012926PF00023.37Ank2422706.3e-56183.9
LXL04_012926PF13857.13Ank_52422795.1e-45151.7
LXL04_012926PF13637.13Ank_42432925.8e-50166.9
LXL04_012926PF13857.13Ank_52633135.1e-45151.7
LXL04_012926PF00023.37Ank2713026.3e-56183.9
LXL04_012926PF13637.13Ank_42803245.8e-50166.9
LXL04_012926PF13857.13Ank_52913465.1e-45151.7
LXL04_012926PF12796.14Ank_22963585e-60200.8
LXL04_012926PF00023.37Ank3053376.3e-56183.9
LXL04_012926PF24521.3Ank_KRIT13634671.1e-1455.1
LXL04_012926PF12796.14Ank_23644555e-60200.8
LXL04_012926PF13637.13Ank_43644135.8e-50166.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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