Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1017 bp · LXL04_012261|LXL04_012261|OH1004|cDNA
atgTCCGACGCTTTAATAAATGGACTTGCCGGCGCCGGTGGTGGAATCATCGCTCAGCTCCTCACTTATCCTCTCCAAACTGTAAACACGCGTCAACAAACCGATAGAGATccgaagaaagagaagaaaaagGCGGGGACGGTTGAACAGATGTATCAGGTTGTTCAACAAGAAGGATGGGGCCGACTATACGGCGGCTTAACGCCCTCGCTGGTTGGCACGGCATGTTCACAGGGTGTTTACTATTATTTCTATCAAAT...
1017 bp · LXL04_012261|LXL04_012261|OH1004|CDS
ATGTCCGACGCTTTAATAAATGGACTTGCCGGCGCCGGTGGTGGAATCATCGCTCAGCTCCTCACTTATCCTCTCCAAACTGTAAACACGCGTCAACAAACCGATAGAGATCCGAAGAAAGAGAAGAAAAAGGCGGGGACGGTTGAACAGATGTATCAGGTTGTTCAACAAGAAGGATGGGGCCGACTATACGGCGGCTTAACGCCCTCGCTGGTTGGCACGGCATGTTCACAGGGTGTTTACTATTATTTCTATCAAAT...
Protein
Download Protein FASTA338 aa · LXL04_012261|LXL04_012261|OH1004|PROTEIN
MSDALINGLAGAGGGIIAQLLTYPLQTVNTRQQTDRDPKKEKKKAGTVEQMYQVVQQEGWGRLYGGLTPSLVGTACSQGVYYYFYQIFRSRAEATALRRKKEGSGDGSVGMLSSLMVAAMSGCVNVLLTNPIWVVVTRMQTHTKKPPSNKVEPIAITGGIETPPPYATSHAVQEVFDEAGVWGFWKGVFPTLVMVSNPSIQFMLYETLLKKLKKRRALNNNNKGITALEASSYRLIVFLLGALAKLGATVVTYPLLVVKA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012261 |
|---|---|
| TK1151 ID | TkA02G577860 |
| OH-1004 ID | LXL04_012261 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012261 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:9294423-9296699 (-) | |||||||||
| Description | Similar to PXN: Peroxisomal nicotinamide adenine dinucleotide carrier | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001561 fatty acid alpha-oxidation Biological Process GO:0006635 fatty acid beta-oxidation Biological Process GO:0015866 ADP transport Biological Process GO:0015867 ATP transport Biological Process GO:0015908 fatty acid transport Biological Process GO:0035349 coenzyme A transmembrane transport Biological Process GO:0035350 FAD transmembrane transport Biological Process GO:0043132 NAD transport Biological Process GO:0044375 regulation of peroxisome size Biological Process GO:0055085 transmembrane transport Biological Process GO:0080121 AMP transport Biological Process GO:1901679 nucleotide transmembrane transport Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G39970 ath:AT5G66380 ddi:DDB_G0272346 hsa:10478 mmu:20524 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00153.33Mito_carr6-90 aaPF00153.33Mito_carr110-214 aaPF00153.33Mito_carr238-321 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012261 | PF00153.33 | Mito_carr | 6 | 90 | 9e-57 | 189.5 |
| LXL04_012261 | PF00153.33 | Mito_carr | 110 | 214 | 9e-57 | 189.5 |
| LXL04_012261 | PF00153.33 | Mito_carr | 238 | 321 | 9e-57 | 189.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.