Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1554 bp · LXL04_012215|LXL04_012215|OH1004|cDNA
ATGGCTGCTGCAACTCCATCCCTCCTTATCCTCCACCCCCGCCTCAGCCTCTTCGCCGCCACTCTCCGCCCTATCTCCCTCATCCACCACCAATTCTCCCTCCAATCTCCCAATCCCAGCCGCCTCTGTGCTCTCTTCAGTCATAGCAAACACCACTACTCTTCCATCTCCCCGTTAGCGACTGCTACCCCTTTGTCTGCCGACAATTCCAATGTCATTGAAACCCCACGTGCCGGTCGATCCGGTTCAGTCTCCTCCCC...
1554 bp · LXL04_012215|LXL04_012215|OH1004|CDS
ATGGCTGCTGCAACTCCATCCCTCCTTATCCTCCACCCCCGCCTCAGCCTCTTCGCCGCCACTCTCCGCCCTATCTCCCTCATCCACCACCAATTCTCCCTCCAATCTCCCAATCCCAGCCGCCTCTGTGCTCTCTTCAGTCATAGCAAACACCACTACTCTTCCATCTCCCCGTTAGCGACTGCTACCCCTTTGTCTGCCGACAATTCCAATGTCATTGAAACCCCACGTGCCGGTCGATCCGGTTCAGTCTCCTCCCC...
Protein
Download Protein FASTA517 aa · LXL04_012215|LXL04_012215|OH1004|PROTEIN
MAAATPSLLILHPRLSLFAATLRPISLIHHQFSLQSPNPSRLCALFSHSKHHYSSISPLATATPLSADNSNVIETPRAGRSGSVSSPPHQVADYAQKIDVNPPKGTRDFPPEEMRLRNWLFDNFKEVSRLFGFEEVDYPVLESEALYIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVPLPIKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPHVTGEAELISSIVTFFKRIGITEKDVGFKISS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012215 |
|---|---|
| TK1151 ID | TkA02G581000 |
| OH-1004 ID | LXL04_012215 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012215 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr03:8466015-8468575 (+) | ||||||
| Description | Similar to At3g46100: Histidine--tRNA ligase, chloroplastic/mitochondrial | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006427 histidyl-tRNA aminoacylation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0004821 histidine-tRNA ligase activity Molecular Function GO:0005524 ATP binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT3G46100 hma:rrnAC3183 nph:NP_5044A ote:Oter_2655 tac:Ta0099 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13393.12tRNA-synt_His105-409 aaPF00587.31tRNA-synt_2b160-295 aaPF03129.26HGTP_anticodon436-516 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012215 | PF13393.12 | tRNA-synt_His | 105 | 409 | 2.2e-40 | 139.5 |
| LXL04_012215 | PF00587.31 | tRNA-synt_2b | 160 | 295 | 4.7e-10 | 40.5 |
| LXL04_012215 | PF03129.26 | HGTP_anticodon | 436 | 516 | 1.7e-08 | 35.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
O82413 | Arabidopsis thaliana | Histidine--tRNA ligase, chloroplastic/mitochondrial | 79.545% | Swiss-Prot | strong database homology |