LXL04_012145 | RubberDandelionOmics

Gene overview

LXL04_012145

Reference: OH-1004 Chr: Chr03 Coordinates: 7316721-7318635 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1149 bp · LXL04_012145|LXL04_012145|OH1004|cDNA

ATGCATCCAAACTCTTATAACCTTTTCACCACCACATTTGCTCATAATTATTACCATCCAAGATTTAGCCACACATCAAACCCACATAATACTCCTAAACATTACAATTCGAAAAAGAGGACCCGGAAGCCACACATGGAAGAGATCGTTTCTTTGATATTTCATGGGCGCAAGTTGGTTAAAGATCTTGAAGAAGCTCTACCCAATATCCCGAACCAACCCTGCCTTCTTATAAGTTTATGTGATGAAATTAGTAGAGT...

CDS

Download CDS FASTA

1149 bp · LXL04_012145|LXL04_012145|OH1004|CDS

ATGCATCCAAACTCTTATAACCTTTTCACCACCACATTTGCTCATAATTATTACCATCCAAGATTTAGCCACACATCAAACCCACATAATACTCCTAAACATTACAATTCGAAAAAGAGGACCCGGAAGCCACACATGGAAGAGATCGTTTCTTTGATATTTCATGGGCGCAAGTTGGTTAAAGATCTTGAAGAAGCTCTACCCAATATCCCGAACCAACCCTGCCTTCTTATAAGTTTATGTGATGAAATTAGTAGAGT...

Protein

Download Protein FASTA

382 aa · LXL04_012145|LXL04_012145|OH1004|PROTEIN

MHPNSYNLFTTTFAHNYYHPRFSHTSNPHNTPKHYNSKKRTRKPHMEEIVSLIFHGRKLVKDLEEALPNIPNQPCLLISLCDEISRVFGDARDRLSLVVHDYGHHEPPAAMEVGGGGSMPEWMQRSSHATDMVLHEQLVQHQHHGLEAIAGQDLGGGNMEPTATALGHSQSQRTRRRTHEADRRTIRMPAPRMGNTEVPPEDGYTWRKYGQKEILGSRFPRGYFRCTHQKLYNCPAKKQVQKLDNDPNTFEVTYRGDHTC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012145`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012145

Location Chr03:7316721-7318635 (-)

Description Similar to WRKY55: WRKY transcription factor 55

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40740`	Transcription factor.	No verified direct reference in this release
`At4g23810`	Transcription factor.	The antagonist function of Arabidopsis WRKY53 and ESR/ESP in leaf senescence is modulated by the jasmonic and salicylic acid equilibrium.2007 · DOI: 10.1105/tpc.106.042705 A HECT E3 ubiquitin ligase negatively regulates Arabidopsis leaf senescence through degradation of the transcription factor WRKY53.2010 · DOI: 10.1111/j.1365-313x.2010.04233.x Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae.2012 · DOI: 10.1016/j.plantsci.2011.12.003
`At3g56400`	Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways.	WRKY70 modulates the selection of signaling pathways in plant defense.2006 · DOI: 10.1111/j.1365-313x.2006.02712.x The WRKY70 transcription factor of Arabidopsis influences both the plant senescence and defense signaling pathways.2007 · DOI: 10.1007/s00425-006-0474-y Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica.2007 · DOI: 10.1094/mpmi-20-2-0120 Transcription factor WRKY70 displays important but no indispensable roles in jasmonate and salicylic acid signaling.2008 · DOI: 10.1111/j.1744-7909.2008.00653.x WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana.2012 · DOI: 10.1093/jxb/err450 EDS1 contributes to nonhost resistance of Arabidopsis thaliana against Erwinia amylovora.2012 · DOI: 10.1094/mpmi-05-11-0111 Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae.2012 · DOI: 10.1016/j.plantsci.2011.12.003 Defense-related transcription factors WRKY70 and WRKY54 modulate osmotic stress tolerance by regulating stomatal aperture in Arabidopsis.2013 · DOI: 10.1111/nph.12378 Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana.2014 · DOI: 10.1007/s11103-013-0136-y Density-dependent interference of aphids with caterpillar-induced defenses in Arabidopsis: involvement of phytohormones and transcription factors.2015 · DOI: 10.1093/pcp/pcu150 Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.2016 · DOI: 10.1093/jxb/erv445 Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.2017 · DOI: 10.1105/tpc.17.00364 WRKY70 and its homolog WRKY54 negatively modulate the cell wall-associated defenses to necrotrophic pathogens in Arabidopsis.2017 · DOI: 10.1371/journal.pone.0183731
`At4g11070`	Transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0571200`	May play a role in defense responses.	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.2012 · DOI: 10.1093/pcp/pcs033

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012145 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0002229 defense response to oomycetes Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009625 response to insect Biological Process

GO:0009682 induced systemic resistance Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009751 response to salicylic acid Biological Process

KEGG gene cross-reference

ath:AT2G40740

ath:AT3G56400

ath:AT4G11070

ath:AT4G23810

dosa:Os05g0571200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · LXL04_012145 · OH-1004

Cytoplasm0.090

Rank 2 · LXL04_012145 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_012145 · OH-1004

Endoplasmic reticulum0.016

Rank 4 · LXL04_012145 · OH-1004

Plastid0.009

Rank 5 · LXL04_012145 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106.22WRKY201-260 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012145	`PF03106.22`	WRKY	201	260	4.9e-27	94.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SHB5`	Arabidopsis thaliana	WRKY transcription factor 55	37.209%	Swiss-Prot	moderate database homology
`Q9SUP6`	Arabidopsis thaliana	Probable WRKY transcription factor 53	38.554%	Swiss-Prot	weak database homology
`Q9LY00`	Arabidopsis thaliana	Probable WRKY transcription factor 70	46.392%	Swiss-Prot	weak database homology
`Q8H0Y8`	Arabidopsis thaliana	Probable WRKY transcription factor 41	37.349%	Swiss-Prot	weak database homology
`Q0DFT7`	Oryza sativa subsp. japonica	Transcription factor WRKY19	39.200%	Swiss-Prot	weak database homology

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