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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_012095
Reference: OH-1004 Chr: Chr03 Coordinates: 6250021-6255782 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3423 bp · LXL04_012095|LXL04_012095|OH1004|cDNA

ATGTCATCAAACACATCAAGCACAAATTCTGAAGAAGAGACATTGATCGATTACGCTATAGACGTAGCTGTTAATTTGGCTAATACGTTATCACAACAAATCGAAAAGGTGTGTGCTCAGTGTGTGACAGTTTTACACAACGTCCAGATGCACGAGGTTAATGTTTTCGCTTGGAAGATGATGGGTGATGCTTTACCTACCCGATGGAACCTGTCACAACGGGGGATGGAGTTGAACACGCTTATATGCCCAATTTGTGG...

CDS

Download CDS FASTA

3423 bp · LXL04_012095|LXL04_012095|OH1004|CDS

ATGTCATCAAACACATCAAGCACAAATTCTGAAGAAGAGACATTGATCGATTACGCTATAGACGTAGCTGTTAATTTGGCTAATACGTTATCACAACAAATCGAAAAGGTGTGTGCTCAGTGTGTGACAGTTTTACACAACGTCCAGATGCACGAGGTTAATGTTTTCGCTTGGAAGATGATGGGTGATGCTTTACCTACCCGATGGAACCTGTCACAACGGGGGATGGAGTTGAACACGCTTATATGCCCAATTTGTGG...

Protein

Download Protein FASTA

1140 aa · LXL04_012095|LXL04_012095|OH1004|PROTEIN

MSSNTSSTNSEEETLIDYAIDVAVNLANTLSQQIEKVCAQCVTVLHNVQMHEVNVFAWKMMGDALPTRWNLSQRGMELNTLICPICGEAVEHMEHLFFTCSFARAVMEKVLRWWGLPAYSIDSLPAWKAWLKDVRYRKSLKHVLEGVFFVTWWAIWKFRNQTLFGCVLPPKVLALYTNHLCYGNLCFENERLALLQFKHDLIDDGNRLSSWNSRNTDCCQWAGIVCDNITGHVQELHLQGPDPDLEEAFTERLSGSINPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_012095
TK1151 IDTkA02G587840
OH-1004 IDLXL04_012095
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 69.474
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_012095
LocationChr03:6250021-6255782 (-)
DescriptionSimilar to EIX2: Receptor-like protein EIX2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g13920 Receptor-like protein 50. No verified direct reference in this release
At3g11010 Receptor-like protein 34. No verified direct reference in this release
At3g11080 Receptor-like protein 35. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012095 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G11010
ath:AT3G11080
ath:AT4G13920
sly:543900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.852
Rank 1 · LXL04_012095 · OH-1004
Endoplasmic reticulum0.096
Rank 2 · LXL04_012095 · OH-1004
Cytoplasm0.062
Rank 3 · LXL04_012095 · OH-1004
Nucleus0.052
Rank 4 · LXL04_012095 · OH-1004
Lysosome / Vacuole0.026
Rank 5 · LXL04_012095 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966.12zf-RVT41-106 aa
PF08263.18LRRNT_2189-227 aa
PF23598.2LRR_14256-322 aa
PF13855.13LRR_8266-322 aa
PF23598.2LRR_14364-533 aa
PF13855.13LRR_8368-428 aa
PF23598.2LRR_14477-673 aa
PF12799.14LRR_4495-538 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_012095PF13966.12zf-RVT411062.1e-1248.2
LXL04_012095PF08263.18LRRNT_21892271.5e-1351.5
LXL04_012095PF23598.2LRR_142563222.9e-40138.8
LXL04_012095PF13855.13LRR_82663226.5e-51170.7
LXL04_012095PF23598.2LRR_143645332.9e-40138.8
LXL04_012095PF13855.13LRR_83684286.5e-51170.7
LXL04_012095PF23598.2LRR_144776732.9e-40138.8
LXL04_012095PF12799.14LRR_44955385.1e-35119.4
LXL04_012095PF13855.13LRR_85486086.5e-51170.7
LXL04_012095PF13855.13LRR_87668256.5e-51170.7
LXL04_012095PF13855.13LRR_88388986.5e-51170.7
LXL04_012095PF13855.13LRR_89549886.5e-51170.7
LXL04_012095PF23598.2LRR_1495710532.9e-40138.8
LXL04_012095PF12799.14LRR_497810125.1e-35119.4
LXL04_012095PF13855.13LRR_899910366.5e-51170.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93YT3Arabidopsis thalianaReceptor-like protein 5032.237%Swiss-Protmoderate database homology
Q9SRL2Arabidopsis thalianaReceptor-like protein 3430.439%Swiss-Protmoderate database homology
Q9SRL7Arabidopsis thalianaReceptor-like protein 3531.420%Swiss-Protmoderate database homology

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