Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1728 bp · LXL04_012042|LXL04_012042|OH1004|cDNA
ATGACTTTTCAGCGGGCAATTTTAATCTCAATGGCGGTGATCACATTGGTCGCCAGCATTTCTCGAGTTTTCACGGGGAAGATGATGGATGTTTTTATCTCACTTTCCCCATTTTCAGCGCTCATCAGGTTAATCGTCATCAACATTCATTCAGTTTTTGATATGGTGTCTGCAACCGAAGCTCGGAAATTGGTGGTGCAAACATTTGCGTATGTTATCCTTAAGGGAGCATTTGCTTCGTTGGTGGTCCTACCAACTTT...
1728 bp · LXL04_012042|LXL04_012042|OH1004|CDS
ATGACTTTTCAGCGGGCAATTTTAATCTCAATGGCGGTGATCACATTGGTCGCCAGCATTTCTCGAGTTTTCACGGGGAAGATGATGGATGTTTTTATCTCACTTTCCCCATTTTCAGCGCTCATCAGGTTAATCGTCATCAACATTCATTCAGTTTTTGATATGGTGTCTGCAACCGAAGCTCGGAAATTGGTGGTGCAAACATTTGCGTATGTTATCCTTAAGGGAGCATTTGCTTCGTTGGTGGTCCTACCAACTTT...
Protein
Download Protein FASTA575 aa · LXL04_012042|LXL04_012042|OH1004|PROTEIN
MTFQRAILISMAVITLVASISRVFTGKMMDVFISLSPFSALIRLIVINIHSVFDMVSATEARKLVVQTFAYVILKGAFASLVVLPTLYQARLWSAWMILILFQKMFLYVTKIRLQRLMKTSPSATHWSDVRIDSAFDMYFSLLAILAANVYWMNVLTMYQTLDPSTKCFLIFYEPLSITFETLHALLVHGFQMLDIWLHYTPHNNTTNSKTLKLLDTAAGKTYSMIFIIILHVILRDVGFFLDIMIYVMYVGHFVHIWWL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012042 |
|---|---|
| TK1151 ID | TkA02G590900 |
| OH-1004 ID | LXL04_012042 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 94.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 53.043Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012042 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:5393188-5398909 (-) | |||||||||
| Description | Similar to RIN2: E3 ubiquitin protein ligase RIN2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0009626 plant-type hypersensitive response Biological Process GO:0016567 protein ubiquitination Biological Process GO:0034052 positive regulation of plant-type hypersensitive response Biological Process GO:0000151 ubiquitin ligase complex Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0043130 ubiquitin binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G25230 ath:AT5G51450 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.