Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1615 bp · LXL04_011998|LXL04_011998|OH1004|cDNA
TATATCATAACCCGTGACTACATCATCAACACTTGACGTAAACGACAACACCCAAACACTTTATACAACCAAAACTCCATTCACAACATCCATCCCTTTAATCCCCTCCATTATTTATACCCACCGCCGtctaccaccaccaccaccaccgtcAATGGCCAACCTTTACCACCTTCTACTTCTTTCTCTCATTCTGATATCCAATTTTGCTCCCACATTTCAAACCCACCTCGCAACCACACCTCCATTGCCGGTGCTAC...
1461 bp · LXL04_011998|LXL04_011998|OH1004|CDS
ATGGCCAACCTTTACCACCTTCTACTTCTTTCTCTCATTCTGATATCCAATTTTGCTCCCACATTTCAAACCCACCTCGCAACCACACCTCCATTGCCGGTGCTACCCCTCCCTTCATACTCCCAACTCAAATGGCAAAAACGAGAAATCATCTTCTTCCATCATTTCGGTGTCAACACGTTTACAGATTCAGAATGGGGGACCGGAAAAGAAAACCCCAAAATTTTCAATCCCAAGGGGCTTAACACCGCCCAGTGGGT...
Protein
Download Protein FASTA486 aa · LXL04_011998|LXL04_011998|OH1004|PROTEIN
MANLYHLLLLSLILISNFAPTFQTHLATTPPLPVLPLPSYSQLKWQKREIIFFHHFGVNTFTDSEWGTGKENPKIFNPKGLNTAQWVDVAVQTGVSLSILTAKHHDGFCLWPSKYTDHSVIGSPWKDGNGDVLEEFTKSAKSRGVDVGLYLSPWDRHDRRYGDILAYNEYYLAQLQELLNKYGSVNEIWFDGAKGSNAPNMSYFFDDWFQMVSELQGTINIFSDAGPGVRWVGNENGFAGTTCWSTINQTSLSIGNESIV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011998 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011998 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:4442464-4446306 (+) | ||||||||||||
| Description | Similar to FUC1: Alpha-L-fucosidase 1 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006004 fucose metabolic process Biological Process GO:0006516 glycoprotein catabolic process Biological Process GO:0009617 response to bacterium Biological Process GO:0016139 glycoside catabolic process Biological Process GO:2000535 regulation of entry of bacterium into host cell Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005615 extracellular space Cellular Component GO:0005764 lysosome Cellular Component GO:0005788 endoplasmic reticulum lumen Cellular Component GO:0035578 azurophil granule lumen Cellular Component GO:0048046 apoplast Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT2G28100 hsa:2519 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01120.24Alpha_L_fucos71-337 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_011998 | PF01120.24 | Alpha_L_fucos | 71 | 337 | 6.7e-31 | 108.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.