LXL04_011926 | RubberDandelionOmics

Gene overview

LXL04_011926

Reference: OH-1004 Chr: Chr03 Coordinates: 2883601-2886496 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1193 bp · LXL04_011926|LXL04_011926|OH1004|cDNA

CTAACCCCCAATCATTTGGCTTAACGTTTCAAGTCAAGCATCGTCTGTTCCCCCTTTTGGCCCCTACAAACCACCGCCTTCCAGAGGGTTCTGCTACTCCGATGGCGTCCGATCTTGCGGCCAAGGCGAAGGAGGCTTACATCGACGACCATTTCGAACTTGCCGTTGAACTCTATTCTCAAGCCATTCTCATCGATCCTAACAACTCCGAGCTTTTCTCCGATCGTGCTCAGGCTAATATTAAACTCAAAAACTTCACC...

CDS

Download CDS FASTA

1149 bp · LXL04_011926|LXL04_011926|OH1004|CDS

CTGTTCCCCCTTTTGGCCCCTACAAACCACCGCCTTCCAGAGGGTTCTGCTACTCCGATGGCGTCCGATCTTGCGGCCAAGGCGAAGGAGGCTTACATCGACGACCATTTCGAACTTGCCGTTGAACTCTATTCTCAAGCCATTCTCATCGATCCTAACAACTCCGAGCTTTTCTCCGATCGTGCTCAGGCTAATATTAAACTCAAAAACTTCACCGAAGCTGTTGCTGATGCAAACAAAGCAATTGAACTGGATTCATC...

Protein

Download Protein FASTA

382 aa · LXL04_011926|LXL04_011926|OH1004|PROTEIN

MFPLLAPTNHRLPEGSATPMASDLAAKAKEAYIDDHFELAVELYSQAILIDPNNSELFSDRAQANIKLKNFTEAVADANKAIELDSSNYKAYLRKGTACFSLEEYQTAKTAFKAGSTIATEDPRFTDWIKKCDKCIAEENSELQTQSSDVMAPSSQTEAATKDAEEVKNVSSQVIITTTPAKPKYRHEHYQKPEEVVVTIFAKGIPASSVSINYGEQIISVTIDVPGEDAYIFQPRLFGKIVPARCRYEVLSTKVEIRLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011926`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011926

Location Chr03:2883601-2886496 (+)

Description Similar to SGT1B: Protein SGT1 homolog B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g11260`	Involved in plant innate immunity.	Regulatory role of SGT1 in early R gene-mediated plant defenses.2002 · DOI: 10.1126/science.1067747 Arabidopsis SGT1b is required for defense signaling conferred by several downy mildew resistance genes.2002 · DOI: 10.1105/tpc.001123 Arabidopsis SGT1b is required for SCF(TIR1)-mediated auxin response.2003 · DOI: 10.1105/tpc.010884 Antagonistic control of disease resistance protein stability in the plant immune system.2005 · DOI: 10.1126/science.1109977 Role of SGT1 in resistance protein accumulation in plant immunity.2006 · DOI: 10.1038/sj.emboj.7601084 Interaction between SGT1 and cytosolic/nuclear HSC70 chaperones regulates Arabidopsis immune responses.2007 · DOI: 10.1105/tpc.107.051896 Enhanced defense responses in Arabidopsis induced by the cell wall protein fractions from Pythium oligandrum require SGT1, RAR1, NPR1 and JAR1.2009 · DOI: 10.1093/pcp/pcp044 SGT1 contributes to coronatine signaling and Pseudomonas syringae pv. tomato disease symptom development in tomato and Arabidopsis.2011 · DOI: 10.1111/j.1469-8137.2010.03470.x
`At4g23570`	Functions in R gene-mediated resistance, but participates in a lower extent than SGT1B to RPP5-mediated resistance.	Role of SGT1 in resistance protein accumulation in plant immunity.2006 · DOI: 10.1038/sj.emboj.7601084

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0624500`	May participate in basal resistance to bacterial blight in rice.	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance.2008 · DOI: 10.1094/mpmi-21-3-0294

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011926 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009408 response to heat Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051382 kinetochore assembly Biological Process

KEGG gene cross-reference

ath:AT4G11260

ath:AT4G23570

bta:515509

dosa:Os01g0624500

zma:103636097

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.762

Rank 1 · LXL04_011926 · OH-1004

Nucleus0.429

Rank 2 · LXL04_011926 · OH-1004

Mitochondrion0.071

Rank 3 · LXL04_011926 · OH-1004

Peroxisome0.062

Rank 4 · LXL04_011926 · OH-1004

Cell membrane0.050

Rank 5 · LXL04_011926 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00515.35TPR_157-88 aa

PF04969.23CS186-261 aa

PF05002.21SGS300-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011926	`PF00515.35`	TPR_1	57	88	2.5e-11	43.6
LXL04_011926	`PF04969.23`	CS	186	261	4e-10	41.2
LXL04_011926	`PF05002.21`	SGS	300	380	6e-36	123.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SUT5`	Arabidopsis thaliana	Protein SGT1 homolog B	61.813%	Swiss-Prot	strong database homology
`Q9SUR9`	Arabidopsis thaliana	Protein SGT1 homolog A	63.085%	Swiss-Prot	strong database homology
`Q0JL44`	Oryza sativa subsp. japonica	Protein SGT1 homolog	62.534%	Swiss-Prot	strong database homology

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