LXL04_011923 | RubberDandelionOmics

Gene overview

LXL04_011923

Reference: OH-1004 Chr: Chr03 Coordinates: 2785916-2787593 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

824 bp · LXL04_011923|LXL04_011923|OH1004|cDNA

CTCCTCTTCTCCAAAAAACGCGACCAGAAACCATTACCATCGACTACTTCTTGATGATAACATCTTTATGCTTTCAGACAAATCAGATTCGTTATGGTCCGTATGGTTCTGAATCAGCCTCTGGTTTCGCATATGCTGGTAAAGGTGGGGTGATTCTTGGGTTTCATGGACCTGCTGACAAGTACATCAAAGCTATCGGGATTTATGTGATTCTTAAATCACAgttattatgtcgaaactctACACTCAAAAACAATTCT...

CDS

Download CDS FASTA

774 bp · LXL04_011923|LXL04_011923|OH1004|CDS

TTGATGATAACATCTTTATGCTTTCAGACAAATCAGATTCGTTATGGTCCGTATGGTTCTGAATCAGCCTCTGGTTTCGCATATGCTGGTAAAGGTGGGGTGATTCTTGGGTTTCATGGACCTGCTGACAAGTACATCAAAGCTATCGGGATTTATGTGATTCTTAAATCACAGTTATTATGTCGAAACTCTACACTCAAAAACAATTCTACACATGAGTTATGTTGTAAGAAGGCTGGATTAGGAGGTAAACCATGGGA...

Protein

Download Protein FASTA

257 aa · LXL04_011923|LXL04_011923|OH1004|PROTEIN

MMITSLCFQTNQIRYGPYGSESASGFAYAGKGGVILGFHGPADKYIKAIGIYVILKSQLLCRNSTLKNNSTHELCCKKAGLGGKPWDDWVFFHVKQVQIEWLTAGDCIAGTTHCLPKLLPTVCTKNFGYSYFLYKFIKKLTASISRYCVVFDPLDGSSNIECGVSIGTPGKEMLAAGYCMYGSSCTLVLSTGSGVNGFTIDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVERCKYPTDGSPAKSLR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011923`
TK1151 ID	TkA07G294130
OH-1004 ID	LXL04_011923
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	95.400
Protein coverage (%)	TK1151 62.286 / OH-1004 42.412 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_011923`
Location	Chr03:2785916-2787593 (+)
Description	Similar to Fructose-1,6-bisphosphatase, cytosolic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011923` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0005985 sucrose metabolic process Biological Process GO:0005986 sucrose biosynthetic process Biological Process GO:0006000 fructose metabolic process Biological Process GO:0006002 fructose 6-phosphate metabolic process Biological Process GO:0006094 gluconeogenesis Biological Process GO:0015979 photosynthesis Biological Process GO:0030388 fructose 1,6-bisphosphate metabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	bna:106401056 sot:102588954 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.429

Rank 1 · LXL04_011923 · OH-1004

Cytoplasm0.261

Rank 2 · LXL04_011923 · OH-1004

Nucleus0.106

Rank 3 · LXL04_011923 · OH-1004

Lysosome / Vacuole0.094

Rank 4 · LXL04_011923 · OH-1004

Mitochondrion0.072

Rank 5 · LXL04_011923 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01419.23Jacalin2-52 aa

PF00316.26FBPase144-168 aa

PF00316.26FBPase169-212 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011923	`PF01419.23`	Jacalin	2	52	1.1e-11	46.0
LXL04_011923	`PF00316.26`	FBPase	144	168	2.8e-26	93.0
LXL04_011923	`PF00316.26`	FBPase	169	212	2.8e-26	93.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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