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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_011869
Reference: OH-1004 Chr: Chr03 Coordinates: 1896513-1899573 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2916 bp · LXL04_011869|LXL04_011869|OH1004|cDNA

ATGATGAGTTATCCAAAGCTTCAACTCTCAatcttccttttctttttcttcatctctttggccacttcatcttcttcttatTTCAACAACACGACTAAATGCTCTATTCAACAGGCCTTTACTTTGCTTCAGTTTAAGGAAAATATTTCCTCCACCGACGACTCATCTTATGATTGGGAGTGTCATCGGCTTGGTTATGGTAATCATCCAATTATGATGAATTGGAACAAGCACACGGATTGTTGCAAGTGGGATGGCAT...

CDS

Download CDS FASTA

2916 bp · LXL04_011869|LXL04_011869|OH1004|CDS

ATGATGAGTTATCCAAAGCTTCAACTCTCAATCTTCCTTTTCTTTTTCTTCATCTCTTTGGCCACTTCATCTTCTTCTTATTTCAACAACACGACTAAATGCTCTATTCAACAGGCCTTTACTTTGCTTCAGTTTAAGGAAAATATTTCCTCCACCGACGACTCATCTTATGATTGGGAGTGTCATCGGCTTGGTTATGGTAATCATCCAATTATGATGAATTGGAACAAGCACACGGATTGTTGCAAGTGGGATGGCAT...

Protein

Download Protein FASTA

971 aa · LXL04_011869|LXL04_011869|OH1004|PROTEIN

MMSYPKLQLSIFLFFFFISLATSSSSYFNNTTKCSIQQAFTLLQFKENISSTDDSSYDWECHRLGYGNHPIMMNWNKHTDCCKWDGITCDHFTGDVIGIDLSCGMLQGTIHLNTTLFHIPHLQRLNLAFNSFAGSQLPREIGRYSNSLTHLNLSNCWFNGEIPSEIFLLSNLVSLDLSKNWGFRIQNHVLNNLLGNSTHLRDLLISGVNISGVLPNLNISSSLKALDLSYTNLQGKLPDNIFKLQNLELLDLSYTYLFTS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_011869
TK1151 IDTkA02G606580
OH-1004 IDLXL04_011869
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.000
Protein coverage (%)TK1151 51.206 / OH-1004 19.670
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_011869
LocationChr03:1896513-1899573 (-)
DescriptionSimilar to RLP7: Receptor-like protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At1g45616 Receptor-like protein 6. No verified direct reference in this release
At2g15080 Receptor-like protein 19. No verified direct reference in this release
At3g11010 Receptor-like protein 34. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011869 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT2G15080
ath:AT3G11010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.847
Rank 1 · LXL04_011869 · OH-1004
Endoplasmic reticulum0.105
Rank 2 · LXL04_011869 · OH-1004
Cytoplasm0.062
Rank 3 · LXL04_011869 · OH-1004
Nucleus0.052
Rank 4 · LXL04_011869 · OH-1004
Lysosome / Vacuole0.026
Rank 5 · LXL04_011869 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_237-90 aa
PF23598.2LRR_14115-206 aa
PF13855.13LRR_8222-281 aa
PF13855.13LRR_8271-330 aa
PF23598.2LRR_14271-350 aa
PF13855.13LRR_8296-354 aa
PF23598.2LRR_14318-399 aa
PF23598.2LRR_14368-435 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_011869PF08263.18LRRNT_237902.7e-0628.3
LXL04_011869PF23598.2LRR_141152062.1e-33116.3
LXL04_011869PF13855.13LRR_82222811.3e-50169.7
LXL04_011869PF13855.13LRR_82713301.3e-50169.7
LXL04_011869PF23598.2LRR_142713502.1e-33116.3
LXL04_011869PF13855.13LRR_82963541.3e-50169.7
LXL04_011869PF23598.2LRR_143183992.1e-33116.3
LXL04_011869PF23598.2LRR_143684352.1e-33116.3
LXL04_011869PF13855.13LRR_84164751.3e-50169.7
LXL04_011869PF24758.2LRR_At5g563704545313e-1247.4
LXL04_011869PF13855.13LRR_86156741.3e-50169.7
LXL04_011869PF13855.13LRR_86857211.3e-50169.7
LXL04_011869PF13855.13LRR_88008381.3e-50169.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C699Arabidopsis thalianaReceptor-like protein 733.200%Swiss-Protmoderate database homology
Q9C637Arabidopsis thalianaReceptor-like protein 631.610%Swiss-Protmoderate database homology
Q9ZUK3Arabidopsis thalianaReceptor-like protein 1931.962%Swiss-Protmoderate database homology
Q9SRL2Arabidopsis thalianaReceptor-like protein 3432.410%Swiss-Protmoderate database homology

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