LXL04_011812 | RubberDandelionOmics

Gene overview

LXL04_011812

Reference: OH-1004 Chr: Chr03 Coordinates: 731734-734445 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1977 bp · LXL04_011812|LXL04_011812|OH1004|cDNA

ATGGTTAGCTTAAACCAAGACGAAGAACATCGATTTTTTGATGCCCAAGATTCCATCGCATCCGTTTCTGATTCAGTTTCTAAACCTGCTTCTAACCATGATTCGGTCCTTAATTGTTTCGAATATGATGTTTGGGTCAGGACTCCAACTAGTGTTCAAGATCGGAAAAACCAGTTCCttaaacttatgagtttaagctTAGATGATGAAATTCAGTCAGATGATTCTGGAGGATTTGACAAAAGGATGATGGAGGCTAG...

CDS

Download CDS FASTA

1977 bp · LXL04_011812|LXL04_011812|OH1004|CDS

ATGGTTAGCTTAAACCAAGACGAAGAACATCGATTTTTTGATGCCCAAGATTCCATCGCATCCGTTTCTGATTCAGTTTCTAAACCTGCTTCTAACCATGATTCGGTCCTTAATTGTTTCGAATATGATGTTTGGGTCAGGACTCCAACTAGTGTTCAAGATCGGAAAAACCAGTTCCTTAAACTTATGAGTTTAAGCTTAGATGATGAAATTCAGTCAGATGATTCTGGAGGATTTGACAAAAGGATGATGGAGGCTAG...

Protein

Download Protein FASTA

658 aa · LXL04_011812|LXL04_011812|OH1004|PROTEIN

MVSLNQDEEHRFFDAQDSIASVSDSVSKPASNHDSVLNCFEYDVWVRTPTSVQDRKNQFLKLMSLSLDDEIQSDDSGGFDKRMMEASDAVLRSPIYEEMSSSTSSVSDSSTVLLSREDFVCRGKILNCGKSCKEDEGGCNSLIHRECDSPPLVQKLVERQIKVAGTMARTMNRVKSQWLSRLRSMTCVVDRQGRCDGLGDGRRSRVERVRVRQNKKRLKELSAVFIGQDIQAHQGSILTMKFSQDGRYLATAGEDGVVRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011812`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_011812`
Location	Chr03:731734-734445 (+)
Description	Similar to SPAC3H5.08c: Uncharacterized WD repeat-containing protein C3H5.08c (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011812` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006887 exocytosis Biological Process GO:0030334 regulation of cell migration Biological Process GO:0043001 Golgi to plasma membrane protein transport Biological Process GO:0045724 positive regulation of cilium assembly Biological Process GO:0060627 regulation of vesicle-mediated transport Biological Process GO:0061512 protein localization to cilium Biological Process GO:0061824 cytosolic ciliogenesis Biological Process GO:1902018 negative regulation of cilium assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	bta:286825 hsa:54521 mmu:72404 spo:2543641 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.489

Rank 1 · LXL04_011812 · OH-1004

Nucleus0.373

Rank 2 · LXL04_011812 · OH-1004

Cell membrane0.151

Rank 3 · LXL04_011812 · OH-1004

Golgi apparatus0.065

Rank 4 · LXL04_011812 · OH-1004

Lysosome / Vacuole0.062

Rank 5 · LXL04_011812 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25172.2Beta-prop_WDR3_2nd219-264 aa

PF24105.2Beta-prop_CAF1B_HIR1224-269 aa

PF24807.2WD40_CDC20-Fz226-264 aa

PF25174.2Beta-prop_THOC3228-264 aa

PF23381.2Beta-prop_IFT122_1st228-263 aa

PF24814.2WD40_Prp19228-263 aa

PF25175.2Beta-prop_WDR5230-265 aa

PF00400.39WD40230-261 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011812	`PF25172.2`	Beta-prop_WDR3_2nd	219	264	9.2e-20	71.8
LXL04_011812	`PF24105.2`	Beta-prop_CAF1B_HIR1	224	269	2.7e-19	70.1
LXL04_011812	`PF24807.2`	WD40_CDC20-Fz	226	264	6.6e-22	78.9
LXL04_011812	`PF25174.2`	Beta-prop_THOC3	228	264	6.2e-34	118.0
LXL04_011812	`PF23381.2`	Beta-prop_IFT122_1st	228	263	4.8e-33	115.4
LXL04_011812	`PF24814.2`	WD40_Prp19	228	263	1.8e-25	90.3
LXL04_011812	`PF25175.2`	Beta-prop_WDR5	230	265	4.3e-42	145.1
LXL04_011812	`PF00400.39`	WD40	230	261	2.1e-36	123.5
LXL04_011812	`PF25173.2`	Beta-prop_WDR3_1st	230	266	2.2e-25	90.1
LXL04_011812	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	230	286	2.8e-24	86.7
LXL04_011812	`PF24817.2`	WD40_WDHD1_1st	232	274	2.4e-26	93.3
LXL04_011812	`PF25175.2`	Beta-prop_WDR5	323	551	4.3e-42	145.1
LXL04_011812	`PF25391.2`	WD40_Gbeta	325	541	9.1e-12	45.3
LXL04_011812	`PF25173.2`	Beta-prop_WDR3_1st	328	408	2.2e-25	90.1
LXL04_011812	`PF00400.39`	WD40	329	364	2.1e-36	123.5
LXL04_011812	`PF24814.2`	WD40_Prp19	329	451	1.8e-25	90.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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