LXL04_011796 | RubberDandelionOmics

Gene overview

LXL04_011796

Reference: OH-1004 Chr: Chr03 Coordinates: 381934-387018 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1587 bp · LXL04_011796|LXL04_011796|OH1004|cDNA

ATGATAATAGCCTAATAGGGCTTTAGATGTAAGACACGTGTCCACCATCAACCGACGCCAAGCAAATTGCCGCATCCCTTCATTTTTCCACCATCGGAAAGCCTCCGTCAAAATTGAGATACGCCTCCGTCAACATCCCGTCGTCTCCGTCTAAATGGCCACATCGGCTCCGTGAAGAACCCGGCAACACAAAGCTTTCATCCATTATCAACCGCTGGCTACTCTTAATGGATTTCGTCATCCACAGCCGTCGGCAACCG...

CDS

Download CDS FASTA

1353 bp · LXL04_011796|LXL04_011796|OH1004|CDS

TTGAGATACGCCTCCGTCAACATCCCGTCGTCTCCGTCTAAATGGCCACATCGGCTCCGTGAAGAACCCGGCAACACAAAGCTTTCATCCATTATCAACCGCTGGCTACTCTTAATGGATTTCGTCATCCACAGCCGTCGGCAACCGCAAGCCCTAACTCCCCATTCGACGATCCCCAATCGACACCACCTTCCATTGCGACATTTACAATTTCAACCCATACCAACGATTACAGAATACAGGAGATCCAGGACATTCTT...

Protein

Download Protein FASTA

450 aa · LXL04_011796|LXL04_011796|OH1004|PROTEIN

MRYASVNIPSSPSKWPHRLREEPGNTKLSSIINRWLLLMDFVIHSRRQPQALTPHSTIPNRHHLPLRHLQFQPIPTITEYRRSRTFFAISIGFLLAFYKHFAMNESFNRPVPDEVKLLDWKASNKPDLIELLNRESCKYVDELLPYPDETDILPNAIARQMMKAVNLITWKAYLGERKFEFTSTRKKLFNYRMNRYSTHELHKPKAVAESASEPDLPKRTPVAGARVHFRHWYLIVISANSLKLYCISFVSSISTTSGVC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011796`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011796

Location Chr03:381934-387018 (-)

Description Similar to Os03g0255100: Beta-galactosidase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28470`	Beta-galactosidase 8.	No verified direct reference in this release
`At4g36360`	Beta-galactosidase 3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0255100`	Releases galactose by hydrolysis of plant cell wall galactose-containing polysaccharides such as galacto-xyloglucan, pectic galactan and galactan (in vitro).	No verified direct reference in this release
`Os03g0165400`	Beta-galactosidase 5.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011796 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT2G28470

ath:AT4G36360

dosa:Os03g0165400

dosa:Os03g0255100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.295

Rank 1 · LXL04_011796 · OH-1004

Cytoplasm0.291

Rank 2 · LXL04_011796 · OH-1004

Endoplasmic reticulum0.165

Rank 3 · LXL04_011796 · OH-1004

Mitochondrion0.139

Rank 4 · LXL04_011796 · OH-1004

Cell membrane0.119

Rank 5 · LXL04_011796 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301.26Glyco_hydro_35285-349 aa

PF01301.26Glyco_hydro_35358-403 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011796	`PF01301.26`	Glyco_hydro_35	285	349	1.9e-28	100.7
LXL04_011796	`PF01301.26`	Glyco_hydro_35	358	403	1.9e-28	100.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCV4`	Arabidopsis thaliana	Beta-galactosidase 8	41.981%	Swiss-Prot	weak database homology
`Q9SCV9`	Arabidopsis thaliana	Beta-galactosidase 3	45.366%	Swiss-Prot	weak database homology
`Q10NX8`	Oryza sativa subsp. japonica	Beta-galactosidase 6	42.439%	Swiss-Prot	weak database homology
`Q10RB4`	Oryza sativa subsp. japonica	Beta-galactosidase 5	47.549%	Swiss-Prot	weak database homology

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