LXL04_011533 | RubberDandelionOmics

Gene overview

LXL04_011533

Reference: OH-1004 Chr: Chr02 Coordinates: 166670114-166673463 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2319 bp · LXL04_011533|LXL04_011533|OH1004|cDNA

ATGCAACATCATTCATGCATAGTTAATCGTTTGGTTTTACTGTTCACAATTGAAGATAGTAAGGAAAAAAGGATAGTAAAGATGATGAAGTTGTTCAAGACATTCCTACTGATTTCTTTGGCTATTGTCATATCTGCAATAGATGAAGAGCGAAAGGTGTTTATAGTTTACCTAGGATCTCTCCCGGAAGGAGAATTTTCCGCTTCAGTGCATCACAATGCAATATTGCAAAAAGTTATGAACCCCAGGTTGGCAAGCAA...

CDS

Download CDS FASTA

2319 bp · LXL04_011533|LXL04_011533|OH1004|CDS

ATGCAACATCATTCATGCATAGTTAATCGTTTGGTTTTACTGTTCACAATTGAAGATAGTAAGGAAAAAAGGATAGTAAAGATGATGAAGTTGTTCAAGACATTCCTACTGATTTCTTTGGCTATTGTCATATCTGCAATAGATGAAGAGCGAAAGGTGTTTATAGTTTACCTAGGATCTCTCCCGGAAGGAGAATTTTCCGCTTCAGTGCATCACAATGCAATATTGCAAAAAGTTATGAACCCCAGGTTGGCAAGCAA...

Protein

Download Protein FASTA

772 aa · LXL04_011533|LXL04_011533|OH1004|PROTEIN

MQHHSCIVNRLVLLFTIEDSKEKRIVKMMKLFKTFLLISLAIVISAIDEERKVFIVYLGSLPEGEFSASVHHNAILQKVMNPRLASKLMIMSYKRSFNGFAAYLSQEEQQKLGGLDEVISVFPSQKLKLHTTRSWDFMGFPSTVERSLTSESNTIVGIIDSGIWPESQSFGDEGLGPIPEKWKGGCHGGTNFTCNRKIIGARFYGDVDSARDTHGHGTHAASIVAGNKVKNANFYSLAEGVARGGVPSARLAVYKACDVH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011533`
TK1151 ID	TkA03G599360
OH-1004 ID	LXL04_011533
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.600
Protein coverage (%)	TK1151 100.000 / OH-1004 77.332 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011533

Location Chr02:166670114-166673463 (-)

Description Similar to SBT4.3: Subtilisin-like protease SBT4.3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59190`	Subtilisin-like protease SBT4.3.	No verified direct reference in this release
`At5g59100`	Subtilisin-like protease SBT4.4.	No verified direct reference in this release
`At3g46850`	Subtilisin-like protease SBT4.6.	No verified direct reference in this release
`At5g59120`	Subtilisin-like protease SBT4.13.	No verified direct reference in this release
`At5g58840`	Subtilisin-like protease SBT4.9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011533 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G46850

ath:AT5G58840

ath:AT5G59100

ath:AT5G59120

ath:AT5G59190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.315

Rank 1 · LXL04_011533 · OH-1004

Cell membrane0.268

Rank 2 · LXL04_011533 · OH-1004

Lysosome / Vacuole0.157

Rank 3 · LXL04_011533 · OH-1004

Cytoplasm0.118

Rank 4 · LXL04_011533 · OH-1004

Endoplasmic reticulum0.102

Rank 5 · LXL04_011533 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05922.22Inhibitor_I953-130 aa

PF00082.28Peptidase_S8152-589 aa

PF17766.8fn3_6637-736 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011533	`PF05922.22`	Inhibitor_I9	53	130	8.5e-12	46.3
LXL04_011533	`PF00082.28`	Peptidase_S8	152	589	1.2e-45	156.7
LXL04_011533	`PF17766.8`	fn3_6	637	736	6e-26	91.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIF8`	Arabidopsis thaliana	Subtilisin-like protease SBT4.3	51.918%	Swiss-Prot	strong database homology
`Q9FGU3`	Arabidopsis thaliana	Subtilisin-like protease SBT4.4	50.776%	Swiss-Prot	strong database homology
`Q9STF7`	Arabidopsis thaliana	Subtilisin-like protease SBT4.6	49.369%	Swiss-Prot	moderate database homology
`Q9FIG2`	Arabidopsis thaliana	Subtilisin-like protease SBT4.13	48.034%	Swiss-Prot	moderate database homology
`Q9FIM5`	Arabidopsis thaliana	Subtilisin-like protease SBT4.9	48.544%	Swiss-Prot	moderate database homology

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