LXL04_011485 | RubberDandelionOmics

Gene overview

LXL04_011485

Reference: OH-1004 Chr: Chr02 Coordinates: 165334459-165335820 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1362 bp · LXL04_011485|LXL04_011485|OH1004|cDNA

ATGCTTCAGTCTCTCCTCCTTCAACACCCCCACTCCACCACGAATGTTACCACCCCCAATTCGTCATCAGTCAACGCCTCCACCATGAACACCAACGCCTCTAAAAGAGCCATCAACGAAGATAACAACGACGTTGATGATCCTTCATCTCACCATAATAAACGCCGGAACCTCGATGATAAGGTGATTGATAATCCGGAGGAGCATGAAGACCAGTCGATCATCATTGAAGCGGAATCATCCGGTTTAAGACTTTTAGG...

CDS

Download CDS FASTA

1362 bp · LXL04_011485|LXL04_011485|OH1004|CDS

ATGCTTCAGTCTCTCCTCCTTCAACACCCCCACTCCACCACGAATGTTACCACCCCCAATTCGTCATCAGTCAACGCCTCCACCATGAACACCAACGCCTCTAAAAGAGCCATCAACGAAGATAACAACGACGTTGATGATCCTTCATCTCACCATAATAAACGCCGGAACCTCGATGATAAGGTGATTGATAATCCGGAGGAGCATGAAGACCAGTCGATCATCATTGAAGCGGAATCATCCGGTTTAAGACTTTTAGG...

Protein

Download Protein FASTA

453 aa · LXL04_011485|LXL04_011485|OH1004|PROTEIN

MLQSLLLQHPHSTTNVTTPNSSSVNASTMNTNASKRAINEDNNDVDDPSSHHNKRRNLDDKVIDNPEEHEDQSIIIEAESSGLRLLGLLLQCAECVAVDNLDHANNLLPEISELSSPFGSSPERVAAYFAEALQARIISSYLGTYTPLSIKKLALAQSQKICNALQSYNSISPFIKFSHFTANQAIFQALDGEDGVHIIDLDIMQGLQWPGLFHILASRPRKIKSLRITGVGSSIELLEATGRRLHDFANSLGLPFEFTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011485`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011485

Location Chr02:165334459-165335820 (-)

Description Similar to SCL23: Scarecrow-like protein 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41920`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At3g54220`	Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0124300`	Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011485 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008356 asymmetric cell division Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009630 gravitropism Biological Process

GO:0009956 radial pattern formation Biological Process

GO:0045454 cell redox homeostasis Biological Process

GO:0048364 root development Biological Process

GO:0048366 leaf development Biological Process

GO:0051457 maintenance of protein location in nucleus Biological Process

GO:0090610 bundle sheath cell fate specification Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G54220

ath:AT5G41920

dosa:Os11g0124300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.682

Rank 1 · LXL04_011485 · OH-1004

Cytoplasm0.382

Rank 2 · LXL04_011485 · OH-1004

Cell membrane0.057

Rank 3 · LXL04_011485 · OH-1004

Endoplasmic reticulum0.045

Rank 4 · LXL04_011485 · OH-1004

Plastid0.027

Rank 5 · LXL04_011485 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03514.21GRAS87-448 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011485	`PF03514.21`	GRAS	87	448	7.9e-117	391.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FHZ1`	Arabidopsis thaliana	Scarecrow-like protein 23	65.721%	Swiss-Prot	strong database homology
`Q9M384`	Arabidopsis thaliana	Protein SCARECROW	63.510%	Swiss-Prot	strong database homology
`Q2RB59`	Oryza sativa subsp. japonica	Protein SCARECROW 1	62.222%	Swiss-Prot	strong database homology

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