LXL04_011448 | RubberDandelionOmics

Gene overview

LXL04_011448

Reference: OH-1004 Chr: Chr02 Coordinates: 164367671-164369419 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

552 bp · LXL04_011448|LXL04_011448|OH1004|cDNA

atgcaagtccttggacttccaaaacatccaaaatggtccttgaacttgtattatgtcacatttgcttcaaatgacttcataatggtttggatagGATCTGATTACAAGAGCACAAGGTTGGTGATATTTTCAAAGTTGCCTACGTTTTCTGATCTGTACACACTTACGATCGCCAGTACAAATCCCAAATCTATTTCAACAAACCCAACCGTGGGGTTCACCAAGAGTGTCACAAAATGGTTTACAACTGATAGAGTGTT...

CDS

Download CDS FASTA

552 bp · LXL04_011448|LXL04_011448|OH1004|CDS

ATGCAAGTCCTTGGACTTCCAAAACATCCAAAATGGTCCTTGAACTTGTATTATGTCACATTTGCTTCAAATGACTTCATAATGGTTTGGATAGGATCTGATTACAAGAGCACAAGGTTGGTGATATTTTCAAAGTTGCCTACGTTTTCTGATCTGTACACACTTACGATCGCCAGTACAAATCCCAAATCTATTTCAACAAACCCAACCGTGGGGTTCACCAAGAGTGTCACAAAATGGTTTACAACTGATAGAGTGTT...

Protein

Download Protein FASTA

183 aa · LXL04_011448|LXL04_011448|OH1004|PROTEIN

MQVLGLPKHPKWSLNLYYVTFASNDFIMVWIGSDYKSTRLVIFSKLPTFSDLYTLTIASTNPKSISTNPTVGFTKSVTKWFTTDRVLVEDMIYLWNPIHHFHQIYENKPRSMSWYALNELQIHGINMYFPFFFFVNNELGLTLWSMDLVIFGMENFCKYGVHTGRQHRNYASIEMKRRKLSMG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011448`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011448

Location Chr02:164367671-164369419 (+)

Description Similar to At2g39960: Probable signal peptidase complex subunit 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39960`	Component of the signal peptidase complex (SPC) which catalyzes the cleavage of N-terminal signal sequences from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011448 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006465 signal peptide processing Biological Process

GO:0045047 protein targeting to ER Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005787 signal peptidase complex Cellular Component

KEGG gene cross-reference

ath:AT2G39960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.340

Rank 1 · LXL04_011448 · OH-1004

Nucleus0.316

Rank 2 · LXL04_011448 · OH-1004

Mitochondrion0.207

Rank 3 · LXL04_011448 · OH-1004

Cell membrane0.119

Rank 4 · LXL04_011448 · OH-1004

Endoplasmic reticulum0.109

Rank 5 · LXL04_011448 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06703.17SPC2517-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011448	`PF06703.17`	SPC25	17	92	1e-07	32.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P58684`	Arabidopsis thaliana	Signal peptidase complex subunit 2	51.948%	Swiss-Prot	weak database homology

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