LXL04_011392 | RubberDandelionOmics

Gene overview

LXL04_011392

Reference: OH-1004 Chr: Chr02 Coordinates: 163727315-163729646 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

978 bp · LXL04_011392|LXL04_011392|OH1004|cDNA

ATGCGCCAAGGCCCCTTGGCGTGTGCCAACACCACCCCCTACACTATGCTAACCATTCATGCCAAGCTGCCACCGTTTTCCGACATTGACGCCGCTCGTTGTTCTACTTTCACGCTGTCCCCTCTGCCTGTTCTCTCTTGTGCTGCCGACGCTCTCCGATATTCACACCTTTTTCCCGTCCGCCGCCGCAGGATTGTGTCGAAGCTGTGCATGACTTTATTTAACACCGCCTGTTACACACATGAAAATCTCATCTCTGT...

CDS

Download CDS FASTA

978 bp · LXL04_011392|LXL04_011392|OH1004|CDS

ATGCGCCAAGGCCCCTTGGCGTGTGCCAACACCACCCCCTACACTATGCTAACCATTCATGCCAAGCTGCCACCGTTTTCCGACATTGACGCCGCTCGTTGTTCTACTTTCACGCTGTCCCCTCTGCCTGTTCTCTCTTGTGCTGCCGACGCTCTCCGATATTCACACCTTTTTCCCGTCCGCCGCCGCAGGATTGTGTCGAAGCTGTGCATGACTTTATTTAACACCGCCTGTTACACACATGAAAATCTCATCTCTGT...

Protein

Download Protein FASTA

325 aa · LXL04_011392|LXL04_011392|OH1004|PROTEIN

MRQGPLACANTTPYTMLTIHAKLPPFSDIDAARCSTFTLSPLPVLSCAADALRYSHLFPVRRRRIVSKLCMTLFNTACYTHENLISVLGFCNEDGEKILLYEYVSHGSVDGHLNYSVGLLRPAYTTTIDWSKWRIFWADERVVPNNHVDSNFKLANDLLLAMLPIIPSCVYTIKDTLHSQEAASQYGNVIRELVRTRVIKASRSNDCQKFDLILLDMGVDGHVASLFPNHRVLEVKREWVTFVVNSPKHPPERITFTLPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011392`
TK1151 ID	TkA03G586170
OH-1004 ID	LXL04_011392
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011392

Location Chr02:163727315-163729646 (-)

Description Similar to PGL1: Probable 6-phosphogluconolactonase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13700`	Catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0416500`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release
`Os07g0604000`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release
`UniProt: A2YNH4`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release
`UniProt: A2XI04`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011392 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006098 pentose-phosphate shunt Biological Process

GO:0009051 pentose-phosphate shunt, oxidative branch Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0017057 6-phosphogluconolactonase activity Molecular Function

KEGG gene cross-reference

ath:AT1G13700

dosa:Os03g0416500

dosa:Os07g0604000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.471

Rank 1 · LXL04_011392 · OH-1004

Nucleus0.368

Rank 2 · LXL04_011392 · OH-1004

Mitochondrion0.108

Rank 3 · LXL04_011392 · OH-1004

Endoplasmic reticulum0.082

Rank 4 · LXL04_011392 · OH-1004

Cell membrane0.072

Rank 5 · LXL04_011392 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01182.27Glucosamine_iso125-285 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011392	`PF01182.27`	Glucosamine_iso	125	285	3.7e-50	171.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMX8`	Arabidopsis thaliana	Probable 6-phosphogluconolactonase 1	57.143%	Swiss-Prot	moderate database homology
`Q75IV7`	Oryza sativa subsp. japonica	Probable 6-phosphogluconolactonase 1	56.977%	Swiss-Prot	moderate database homology
`Q6Z4H0`	Oryza sativa subsp. japonica	Probable 6-phosphogluconolactonase 2	55.422%	Swiss-Prot	moderate database homology
`A2YNH4`	Oryza sativa subsp. indica	Probable 6-phosphogluconolactonase 2	55.422%	Swiss-Prot	moderate database homology
`A2XI04`	Oryza sativa subsp. indica	Probable 6-phosphogluconolactonase 1	58.434%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card