LXL04_011143 | RubberDandelionOmics

Gene overview

LXL04_011143

Reference: OH-1004 Chr: Chr02 Coordinates: 158906622-158907307 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

537 bp · LXL04_011143|LXL04_011143|OH1004|cDNA

ATGGCGACGATTCCATGTACTGTTCAACTCATCTTCGCGAGTTCAGATACAATTTCTATAAACAATTCGATCCCAGTTCTGCGTAAACTTAATTCACAGTTTCTTGGAATGCGTAAAGGACTCGGGTTTTGCAGGCCAACTTCAGCAATTGGGCCTAGTAGTTGTGGTTCAAGAACCACCTGTTGGTTCAAGTTCGGTAAAAATGGCGTCGATGCTGAGGGTGCTGGTATTTACGGCAGCCAATCTCGCGACGATTTTGA...

CDS

Download CDS FASTA

537 bp · LXL04_011143|LXL04_011143|OH1004|CDS

ATGGCGACGATTCCATGTACTGTTCAACTCATCTTCGCGAGTTCAGATACAATTTCTATAAACAATTCGATCCCAGTTCTGCGTAAACTTAATTCACAGTTTCTTGGAATGCGTAAAGGACTCGGGTTTTGCAGGCCAACTTCAGCAATTGGGCCTAGTAGTTGTGGTTCAAGAACCACCTGTTGGTTCAAGTTCGGTAAAAATGGCGTCGATGCTGAGGGTGCTGGTATTTACGGCAGCCAATCTCGCGACGATTTTGA...

Protein

Download Protein FASTA

178 aa · LXL04_011143|LXL04_011143|OH1004|PROTEIN

MATIPCTVQLIFASSDTISINNSIPVLRKLNSQFLGMRKGLGFCRPTSAIGPSSCGSRTTCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMMAASEGDKPKIEELLKAGAKFDVKDAGGKTAVDKAVNDEIKNFILSYSAQKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011143`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011143

Location Chr02:158906622-158907307 (+)

Description Similar to LTD: Protein LHCP TRANSLOCATION DEFECT

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g50900`	Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway.	The GDC1 gene encodes a novel ankyrin domain-containing protein that is essential for grana formation in Arabidopsis.2011 · DOI: 10.1104/pp.110.165589

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0520800`	Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway.	No verified direct reference in this release
`UniProt: A2YLX7`	Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011143 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0090391 granum assembly Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ath:AT1G50900

dosa:Os07g0520800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · LXL04_011143 · OH-1004

Mitochondrion0.024

Rank 2 · LXL04_011143 · OH-1004

Nucleus0.019

Rank 3 · LXL04_011143 · OH-1004

Cytoplasm0.014

Rank 4 · LXL04_011143 · OH-1004

Cell membrane0.010

Rank 5 · LXL04_011143 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VY88`	Arabidopsis thaliana	Protein LHCP TRANSLOCATION DEFECT	75.862%	Swiss-Prot	strong database homology
`A3BKF2`	Oryza sativa subsp. japonica	Protein LHCP TRANSLOCATION DEFECT	60.440%	Swiss-Prot	strong database homology
`A2YLX7`	Oryza sativa subsp. indica	Protein LHCP TRANSLOCATION DEFECT	60.440%	Swiss-Prot	strong database homology

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