LXL04_011091 | RubberDandelionOmics

Gene overview

LXL04_011091

Reference: OH-1004 Chr: Chr02 Coordinates: 157754804-157755743 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

663 bp · LXL04_011091|LXL04_011091|OH1004|cDNA

ATGGAAAAAAACCGTTCGAGTTTTCCGATGTTAGCATCAGTCTCCATACATTTGTTGGTGATATCAATCGTGGGCCTTGTTCTATATTGGCTCACAAGCTTAAGGGAAGGCCTTGCTCTCTCATCTTCCATACCAATGAAGATTTTTAACTTGCACCCACTTCTTATGGTACTCGGATTCTTTATTTTTTCAGGCgaagCGATGATTGCATACAAGGCGATCCCAGCACAGAGACAAACAATTAAATTAATTCACCTTAT...

CDS

Download CDS FASTA

663 bp · LXL04_011091|LXL04_011091|OH1004|CDS

ATGGAAAAAAACCGTTCGAGTTTTCCGATGTTAGCATCAGTCTCCATACATTTGTTGGTGATATCAATCGTGGGCCTTGTTCTATATTGGCTCACAAGCTTAAGGGAAGGCCTTGCTCTCTCATCTTCCATACCAATGAAGATTTTTAACTTGCACCCACTTCTTATGGTACTCGGATTCTTTATTTTTTCAGGCGAAGCGATGATTGCATACAAGGCGATCCCAGCACAGAGACAAACAATTAAATTAATTCACCTTAT...

Protein

Download Protein FASTA

220 aa · LXL04_011091|LXL04_011091|OH1004|PROTEIN

MEKNRSSFPMLASVSIHLLVISIVGLVLYWLTSLREGLALSSSIPMKIFNLHPLLMVLGFFIFSGEAMIAYKAIPAQRQTIKLIHLMFHLIALASGIFGVYAVFKFHDEVKGAHMYTLHSWIGMATIVLFGFQLIFGSITFLFPGAAPATRARFAPWHVFAGVLIFFLAIVTAETGLTEKFLFQKLKHGQEALLVNFIGLLILVFGISVIGTAVFPIRRK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011091`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011091

Location Chr02:157754804-157755743 (-)

Description Similar to Os02g0642300: Probable ascorbate-specific transmembrane electron transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14730`	Two-heme-containing cytochrome.	No verified direct reference in this release
`At5g38630`	Two-heme-containing cytochrome.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0642300`	Two-heme-containing cytochrome.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011091 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0019852 L-ascorbic acid metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0000293 ferric-chelate reductase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0140571 transmembrane ascorbate ferrireductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G14730

ath:AT5G38630

dosa:Os02g0642300

zma:100273009

zma:100384594

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.317

Rank 1 · LXL04_011091 · OH-1004

Cytoplasm0.289

Rank 2 · LXL04_011091 · OH-1004

Lysosome / Vacuole0.228

Rank 3 · LXL04_011091 · OH-1004

Golgi apparatus0.191

Rank 4 · LXL04_011091 · OH-1004

Endoplasmic reticulum0.160

Rank 5 · LXL04_011091 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03188.22Cytochrom_B56151-184 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011091	`PF03188.22`	Cytochrom_B561	51	184	2.5e-42	145.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q67ZF6`	Arabidopsis thaliana	Probable transmembrane ascorbate ferrireductase 3	41.509%	Swiss-Prot	moderate database homology
`Q9SWS1`	Arabidopsis thaliana	Transmembrane ascorbate ferrireductase 2	43.842%	Swiss-Prot	moderate database homology
`A3A9H6`	Oryza sativa subsp. japonica	Probable ascorbate-specific transmembrane electron transporter 1	45.455%	Swiss-Prot	moderate database homology

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