Gene Card
Gene overview
cDNA / CDS / Protein Sequences
687 bp · LXL04_010422|LXL04_010422|OH1004|cDNA
ATGCCATTCACGAGCATCCGCCCATTTCCACCCACCATCATTGCACCACGAGTTTACCACCGCCTTGTCTCCGCCGTGGCAACATCTTCGGGAACCGCCATTACATCCCTAAATCACTCACCACTTCTCACTTCTACTACAAGGAAACATCGACTTGATGGAACAATGGTGACTAAAAAGAGTGGAATTGGATTCAAAAATTACATTTACATGGAATTGGAGAACAATATTGCAGCCACAACTGATGATCTTATTATTTT...
621 bp · LXL04_010422|LXL04_010422|OH1004|CDS
ATGCCATTCACGAGCATCCGCCCATTTCCACCCACCATCATTGCACCACGAGTTTACCACCGCCTTGTCTCCGCCGTGGCAACATCTTCGGGAACCGCCATTACATCCCTAAATCACTCACCACTTCTCACTTCTACTACAAGGAAACATCGACTTGATGGAACAATGGTGACTAAAAAGAGTGGAATTGGATTCAAAAATTACATTTACATGGAATTGGAGAACAATATTGCAGCCACAACTGATGATCTTATTATTTT...
Protein
Download Protein FASTA206 aa · LXL04_010422|LXL04_010422|OH1004|PROTEIN
MPFTSIRPFPPTIIAPRVYHRLVSAVATSSGTAITSLNHSPLLTSTTRKHRLDGTMVTKKSGIGFKNYIYMELENNIAATTDDLIIFLIPIGLEECIRFIANFKLSKEDIAFLQECLSPKCEDAFFDYLESIDCSDVEVYAIAEGSIVFPKVPLMRIEGLVAVVQLLETPFVNLINFASLVTTNATIHRFVAGKDKLLLEFGLQRA
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010422 |
|---|---|
| TK1151 ID | TkA03G526770 |
| OH-1004 ID | LXL04_010422 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 79.800 |
| Protein coverage (%) | TK1151 94.388 / OH-1004 90.291Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010422 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:146347081-146349242 (-) | |||||||||
| Description | Similar to NAPRT2: Nicotinate phosphoribosyltransferase 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006979 response to oxidative stress Biological Process GO:0009435 NAD+ biosynthetic process Biological Process GO:0034355 NAD+ biosynthetic process via the salvage pathway Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004516 nicotinate phosphoribosyltransferase activity Molecular Function GO:0016740 transferase activity Molecular Function GO:0016757 glycosyltransferase activity Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G23420 ath:AT4G36940 bta:399559 ddi:DDB_G0268472 rno:315085 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF17767.8NAPRTase_N92-176 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010422 | PF17767.8 | NAPRTase_N | 92 | 176 | 1.9e-19 | 71.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.