LXL04_010407 | RubberDandelionOmics

Gene overview

LXL04_010407

Reference: OH-1004 Chr: Chr02 Coordinates: 146186479-146187087 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

318 bp · LXL04_010407|LXL04_010407|OH1004|cDNA

ATGGGAGAAGTGAAGCACATACTTCTAGCCAAGTTCAAGGATGAAATCTCGCAAGAACAGATCGACCATCTCATCAAGGGTTATGCGAATCTCGTCAATCATGTCGAACCCATGAAATCCTTTCGATGGGGTAAAGATGTGAGCATTGAGAATCTTCACCAAGGCTTCACTCATGTTTTTGAATCGACTTTTGAAACCACGGAAGGAATTGCAACTTATATATCTCACCCAGCCCATGTTGAGTTCGCCAATGGTTTCCT...

CDS

Download CDS FASTA

318 bp · LXL04_010407|LXL04_010407|OH1004|CDS

ATGGGAGAAGTGAAGCACATACTTCTAGCCAAGTTCAAGGATGAAATCTCGCAAGAACAGATCGACCATCTCATCAAGGGTTATGCGAATCTCGTCAATCATGTCGAACCCATGAAATCCTTTCGATGGGGTAAAGATGTGAGCATTGAGAATCTTCACCAAGGCTTCACTCATGTTTTTGAATCGACTTTTGAAACCACGGAAGGAATTGCAACTTATATATCTCACCCAGCCCATGTTGAGTTCGCCAATGGTTTCCT...

Protein

Download Protein FASTA

105 aa · LXL04_010407|LXL04_010407|OH1004|PROTEIN

MGEVKHILLAKFKDEISQEQIDHLIKGYANLVNHVEPMKSFRWGKDVSIENLHQGFTHVFESTFETTEGIATYISHPAHVEFANGFLAVLDKVLVIDYKPIVVDP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010407`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010407

Location Chr02:146186479-146187087 (+)

Description Similar to HS1: Stress-response A/B barrel domain-containing protein HS1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17210`	Heat stable protein involved in defense against fungal pathogens.	No verified direct reference in this release
`At5g22580`	Involved in stress response.	No verified direct reference in this release
`At2g31670`	Involved in stress response.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010407 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009865 pollen tube adhesion Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:1901696 cannabinoid biosynthetic process Biological Process

GO:1901697 olivetolic acid biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ag:AFN42527

ath:AT2G31670

ath:AT3G17210

ath:AT5G22580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.781

Rank 1 · LXL04_010407 · OH-1004

Nucleus0.315

Rank 2 · LXL04_010407 · OH-1004

Peroxisome0.060

Rank 3 · LXL04_010407 · OH-1004

Mitochondrion0.058

Rank 4 · LXL04_010407 · OH-1004

Cell membrane0.056

Rank 5 · LXL04_010407 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07876.19Dabb4-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010407	`PF07876.19`	Dabb	4	99	4e-30	105.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LUV2`	Arabidopsis thaliana	Stress-response A/B barrel domain-containing protein HS1	72.816%	Swiss-Prot	strong database homology
`Q9FK81`	Arabidopsis thaliana	Stress-response A/B barrel domain-containing protein At5g22580	44.211%	Swiss-Prot	moderate database homology
`Q9SIP1`	Arabidopsis thaliana	Stress-response A/B barrel domain-containing protein UP3	26.733%	Swiss-Prot	weak database homology

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