Gene Card
Gene overview
cDNA / CDS / Protein Sequences
825 bp · LXL04_010236|LXL04_010236|OH1004|cDNA
ATGGCTAAACCACGACGTTTTCAAATCCTAATCCAACAACTGTACAAATCAACATGTCATCGCAATCCACCGGCACTCCTTCAGCACCTCAGAACGCTGACGCAGATCCCAAATTTGCCTGAAAAATCCTTACACCCTAAATCCCACCACACTCTTTCGACCCCTAATTTCTATCCTTCATCAACAAATTGCACGACGTATCGCCATTTCTCCTCTGATCGACACGATAACAGCGATAACAACGATGAAACTGAAgaaga...
825 bp · LXL04_010236|LXL04_010236|OH1004|CDS
ATGGCTAAACCACGACGTTTTCAAATCCTAATCCAACAACTGTACAAATCAACATGTCATCGCAATCCACCGGCACTCCTTCAGCACCTCAGAACGCTGACGCAGATCCCAAATTTGCCTGAAAAATCCTTACACCCTAAATCCCACCACACTCTTTCGACCCCTAATTTCTATCCTTCATCAACAAATTGCACGACGTATCGCCATTTCTCCTCTGATCGACACGATAACAGCGATAACAACGATGAAACTGAAGAAGA...
Protein
Download Protein FASTA274 aa · LXL04_010236|LXL04_010236|OH1004|PROTEIN
MAKPRRFQILIQQLYKSTCHRNPPALLQHLRTLTQIPNLPEKSLHPKSHHTLSTPNFYPSSTNCTTYRHFSSDRHDNSDNNDETEEDDSDYDDDDVDDDEMRDDAPNHGVKREYSPEEKEAEAAAIGYKVIGQLQRSDRVFKTYEPVFAVIQIGSHQFKVSNGDCIYTEKLKFCEVHDKVILNKVLMLGSKTQTMIGRPVLPEATVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITDIQGIEKPEIPTPE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010236 |
|---|---|
| TK1151 ID | TkA03G513370 |
| OH-1004 ID | LXL04_010236 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010236 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:142670241-142672336 (-) | |||||||||
| Description | Similar to RPL21M: 50S ribosomal protein L21, mitochondrial | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000741 karyogamy Biological Process GO:0006412 translation Biological Process GO:0009553 embryo sac development Biological Process GO:0009555 pollen development Biological Process GO:0009567 double fertilization forming a zygote and endosperm Biological Process GO:0009658 chloroplast organization Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0010027 thylakoid membrane organization Biological Process GO:0010197 polar nucleus fusion Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G35680 ath:AT4G30930 mag:amb4077 rce:RC1_0448 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00829.27Ribosomal_L21p148-248 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010236 | PF00829.27 | Ribosomal_L21p | 148 | 248 | 3.7e-33 | 114.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.