Gene Card
Gene overview
cDNA / CDS / Protein Sequences
905 bp · LXL04_010234|LXL04_010234|OH1004|cDNA
ATGCATCAATGGAGATCGCAACCCAAATCAATGGAGAACAGTTCCCAAGAAACCGTCGTAGTGATCAAGAAAGGGGATGTAATTCCATTGCAACGGGGGGTGGTGTCATGGTGGTTCAACGGCGGTGAAACCGATTTGACCATCGTGTTCATAGGCGAAACCACCATAGCTCAAATCCCAGGTCAATTCACCTACTATTTCATGGCTGGAGTTCTAGGAATCCTACGTGGATTCCAATCTGATGTCGTCGCCAAAGTCTT...
885 bp · LXL04_010234|LXL04_010234|OH1004|CDS
ATGCATCAATGGAGATCGCAACCCAAATCAATGGAGAACAGTTCCCAAGAAACCGTCGTAGTGATCAAGAAAGGGGATGTAATTCCATTGCAACGGGGGGTGGTGTCATGGTGGTTCAACGGCGGTGAAACCGATTTGACCATCGTGTTCATAGGCGAAACCACCATAGCTCAAATCCCAGGTCAATTCACCTACTATTTCATGGCTGGAGTTCTAGGAATCCTACGTGGATTCCAATCTGATGTCGTCGCCAAAGTCTT...
Protein
Download Protein FASTA294 aa · LXL04_010234|LXL04_010234|OH1004|PROTEIN
MHQWRSQPKSMENSSQETVVVIKKGDVIPLQRGVVSWWFNGGETDLTIVFIGETTIAQIPGQFTYYFMAGVLGILRGFQSDVVAKVFGLTNQESEDIATSQPGVVIVKLGDGIIFPNASKYVKEKLYATIDTPKADVVVKGGRTINSLTGKDFPMVVEMGLSARFVRLECEAILAPSYVADGSIQVIYVAKGRGRIRVVGSDGNPSFDGEVGEGELMVVPRFFGVTVIADEGGMELFLIINTSKPVYEQLAGKVSVWKAL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010234 |
|---|---|
| TK1151 ID | TkA03G513260 |
| OH-1004 ID | LXL04_010234 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 65.646Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010234 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:142640328-142641405 (-) | |||||||||
| Description | Similar to FA02: 13S globulin seed storage protein 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0048316 seed development Biological Process GO:0019863 IgE binding Molecular Function GO:0019864 IgG binding Molecular Function GO:0045735 nutrient reservoir activity Molecular Function | |||||||||
| KEGG gene cross-reference | dosa:Os10g0400200 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00190.29Cupin_118-93 aaPF00190.29Cupin_1130-274 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010234 | PF00190.29 | Cupin_1 | 18 | 93 | 4e-27 | 95.3 |
| LXL04_010234 | PF00190.29 | Cupin_1 | 130 | 274 | 4e-27 | 95.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.