LXL04_010099 | RubberDandelionOmics

Gene overview

LXL04_010099

Reference: OH-1004 Chr: Chr02 Coordinates: 140079926-140080783 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

858 bp · LXL04_010099|LXL04_010099|OH1004|cDNA

ATGTTCATACTCGCCGGAAAATTCTTCTTATGGTTATTTTCCATTTTCATGTATTTAATCAATACCATCACCTTAGCTCAACCCGACTTCATTTATTATGACTGCCAAAACGCAGCTAATTACACCAAAAACAGTACGTACCAAAGAAATCTTGAAACCTCCCTCTCCGCCCTTCCGAACACCAATTCCGGCTTTGGTTTCTACAACTTCTCCACCGGCAATGGAAACGACAGAGTCAACTCCATGGCCCTTTGTCGGGG...

CDS

Download CDS FASTA

858 bp · LXL04_010099|LXL04_010099|OH1004|CDS

ATGTTCATACTCGCCGGAAAATTCTTCTTATGGTTATTTTCCATTTTCATGTATTTAATCAATACCATCACCTTAGCTCAACCCGACTTCATTTATTATGACTGCCAAAACGCAGCTAATTACACCAAAAACAGTACGTACCAAAGAAATCTTGAAACCTCCCTCTCCGCCCTTCCGAACACCAATTCCGGCTTTGGTTTCTACAACTTCTCCACCGGCAATGGAAACGACAGAGTCAACTCCATGGCCCTTTGTCGGGG...

Protein

Download Protein FASTA

285 aa · LXL04_010099|LXL04_010099|OH1004|PROTEIN

MFILAGKFFLWLFSIFMYLINTITLAQPDFIYYDCQNAANYTKNSTYQRNLETSLSALPNTNSGFGFYNFSTGNGNDRVNSMALCRGDVDSNSCRSCLSDSIVKLPQICPVQREAIGYYDNCLLQYSDNIISGYNQQGTNENLVNPQNATDRDRFTRSLMSLLNELGREAAAGGPLRKFATGNTSGPDFTTIYGLAQCTPDLSEQECSDCLDDSVNQFAILYRGENGGRSLLPVCNFRYEIFRFFNGSTMVIPSPPPPPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010099`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010099

Location Chr02:140079926-140080783 (+)

Description Similar to CRK25: Cysteine-rich receptor-like protein kinase 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release
`At4g21410`	Cysteine-rich receptor-like protein kinase 29.	No verified direct reference in this release
`At4g23230`	Cysteine-rich receptor-like protein kinase 15.	No verified direct reference in this release
`At4g23170`	Putative cysteine-rich receptor-like protein kinase 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010099 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0012501 programmed cell death Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G21410

ath:AT4G23170

ath:AT4G23230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.667

Rank 1 · LXL04_010099 · OH-1004

Extracellular0.143

Rank 2 · LXL04_010099 · OH-1004

Endoplasmic reticulum0.086

Rank 3 · LXL04_010099 · OH-1004

Cytoplasm0.064

Rank 4 · LXL04_010099 · OH-1004

Lysosome / Vacuole0.029

Rank 5 · LXL04_010099 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung35-128 aa

PF01657.23Stress-antifung147-240 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010099	`PF01657.23`	Stress-antifung	35	128	4.1e-38	130.7
LXL04_010099	`PF01657.23`	Stress-antifung	147	240	4.1e-38	130.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	37.358%	Swiss-Prot	moderate database homology
`O65468`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 8	38.996%	Swiss-Prot	moderate database homology
`Q8S9L6`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 29	34.902%	Swiss-Prot	moderate database homology
`Q8W4G6`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 15	38.846%	Swiss-Prot	moderate database homology
`O65469`	Arabidopsis thaliana	Putative cysteine-rich receptor-like protein kinase 9	37.229%	Swiss-Prot	moderate database homology

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