LXL04_010097 | RubberDandelionOmics

Gene overview

LXL04_010097

Reference: OH-1004 Chr: Chr02 Coordinates: 140028468-140032421 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1968 bp · LXL04_010097|LXL04_010097|OH1004|cDNA

ATGGTGCCCATCATTCTATCGCTCTTACTTTTCCTCGTGCCTTATGCTTTTGGAGGAGAATATTCATCCGTCAAGTGCATCTCCAATAAAACCATCTACACTCAAAACACTACTTACCATCTTAACCTTAATGAACTCCTGTCTTCCTTTTCCACTGAAGAAGTAGTAATCACCGATCTTTTTTCTCACAAAACCGCCGGCAGCCCTCCAGATGCCGCATACGGGCTCTATCTTTGTCGTGCGGATAAACTCCCAAATGA...

CDS

Download CDS FASTA

1968 bp · LXL04_010097|LXL04_010097|OH1004|CDS

ATGGTGCCCATCATTCTATCGCTCTTACTTTTCCTCGTGCCTTATGCTTTTGGAGGAGAATATTCATCCGTCAAGTGCATCTCCAATAAAACCATCTACACTCAAAACACTACTTACCATCTTAACCTTAATGAACTCCTGTCTTCCTTTTCCACTGAAGAAGTAGTAATCACCGATCTTTTTTCTCACAAAACCGCCGGCAGCCCTCCAGATGCCGCATACGGGCTCTATCTTTGTCGTGCGGATAAACTCCCAAATGA...

Protein

Download Protein FASTA

655 aa · LXL04_010097|LXL04_010097|OH1004|PROTEIN

MVPIILSLLLFLVPYAFGGEYSSVKCISNKTIYTQNTTYHLNLNELLSSFSTEEVVITDLFSHKTAGSPPDAAYGLYLCRADKLPNDCRNCLITAGREITKQCPNTKQAIRWSDDCMLRYSDTHFFYKIEKSPVDYVCNKGNVSKLEVEKDDFEKLVADMMDELIIQASNHSKKYAYKSAVFNETEKVFGLLQCTQDLSGFDCDQCLRSEVNRLVNELCGGKLGGRISTPSCNLRYEIYEFYKFPSSDDELKVPSSLTKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010097`
TK1151 ID	TkA03G498010
OH-1004 ID	LXL04_010097
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010097

Location Chr02:140028468-140032421 (-)

Description Similar to CRK25: Cysteine-rich receptor-like protein kinase 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release
`At4g23180`	Cysteine-rich receptor-like protein kinase 10.	No verified direct reference in this release
`At3g45860`	Cysteine-rich receptor-like protein kinase 4.	No verified direct reference in this release
`At4g23130`	Involved in multiple distinct defense responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010097 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0012501 programmed cell death Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0080136 priming of cellular response to stress Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G45860

ath:AT4G05200

ath:AT4G23130

ath:AT4G23180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.876

Rank 1 · LXL04_010097 · OH-1004

Endoplasmic reticulum0.081

Rank 2 · LXL04_010097 · OH-1004

Cytoplasm0.072

Rank 3 · LXL04_010097 · OH-1004

Nucleus0.038

Rank 4 · LXL04_010097 · OH-1004

Lysosome / Vacuole0.027

Rank 5 · LXL04_010097 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung25-122 aa

PF01657.23Stress-antifung138-238 aa

PF00069.32Pkinase333-601 aa

PF07714.24PK_Tyr_Ser-Thr335-604 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010097	`PF01657.23`	Stress-antifung	25	122	9.7e-36	123.1
LXL04_010097	`PF01657.23`	Stress-antifung	138	238	9.7e-36	123.1
LXL04_010097	`PF00069.32`	Pkinase	333	601	2.3e-44	152.5
LXL04_010097	`PF07714.24`	PK_Tyr_Ser-Thr	335	604	7e-51	173.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	44.131%	Swiss-Prot	moderate database homology
`O65468`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 8	45.938%	Swiss-Prot	moderate database homology
`Q8GYA4`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 10	44.984%	Swiss-Prot	moderate database homology
`Q9LZU4`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 4	46.390%	Swiss-Prot	moderate database homology
`Q9C5S8`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 5	47.410%	Swiss-Prot	moderate database homology

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