LXL04_010096 | RubberDandelionOmics

Gene overview

LXL04_010096

Reference: OH-1004 Chr: Chr02 Coordinates: 140024984-140025697 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

714 bp · LXL04_010096|LXL04_010096|OH1004|cDNA

atgAATAGTACCCCACACCAGCAAATCCCAATTCACTACACCCCTGACAACCGCCATAACCAACCTCGTCCCAACAATGGTGGTCAGTTAAAGCGCCACCACACTGCCCGATACTACGTCCACCGAGTCAAAGAAAGTCTAACCACTCGTGTATCAAAGCTCATATGCGCTGTTTTTCTCAGCCTTTTGTTCATCGTCGGACTCATAACATTCATCTTATGGCTCAGTTTACGCCCACATCGTCCACGATTCCATATCCG...

CDS

Download CDS FASTA

714 bp · LXL04_010096|LXL04_010096|OH1004|CDS

ATGAATAGTACCCCACACCAGCAAATCCCAATTCACTACACCCCTGACAACCGCCATAACCAACCTCGTCCCAACAATGGTGGTCAGTTAAAGCGCCACCACACTGCCCGATACTACGTCCACCGAGTCAAAGAAAGTCTAACCACTCGTGTATCAAAGCTCATATGCGCTGTTTTTCTCAGCCTTTTGTTCATCGTCGGACTCATAACATTCATCTTATGGCTCAGTTTACGCCCACATCGTCCACGATTCCATATCCG...

Protein

Download Protein FASTA

237 aa · LXL04_010096|LXL04_010096|OH1004|PROTEIN

MNSTPHQQIPIHYTPDNRHNQPRPNNGGQLKRHHTARYYVHRVKESLTTRVSKLICAVFLSLLFIVGLITFILWLSLRPHRPRFHIREFSVPALAQENGFAAVSATFNVTVRNANLNIGIYYDTMHLTLYYQNNLNIGELPLLNPFYQSPKNTTALIGTLSGSTFQVDEARWAQFRADRMRGVVVFRMDIATSIRFKVATWESKNHKMHATCQIKVGPDGLLIIGTEKEMKCPVYFT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010096`
TK1151 ID	TkA03G498000
OH-1004 ID	LXL04_010096
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010096

Location Chr02:140024984-140025697 (+)

Description Similar to NDR1: Protein NDR1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20600`	Involved in disease resistance.	NDR1, a locus of Arabidopsis thaliana that is required for disease resistance to both a bacterial and a fungal pathogen.1995 · DOI: 10.1073/pnas.92.14.6597 The role of NDR1 in avirulence gene-directed signaling and control of programmed cell death in Arabidopsis.2001 · PMID: 11706189 Overexpression of the plasma membrane-localized NDR1 protein results in enhanced bacterial disease resistance in Arabidopsis thaliana.2004 · DOI: 10.1111/j.1365-313x.2004.02203.x Early responses in the Arabidopsis-Verticillium longisporum pathosystem are dependent on NDR1, JA- and ET-associated signals via cytosolic NPR1 and RFO1.2006 · DOI: 10.1094/mpmi-19-0958 NDR1 interaction with RIN4 mediates the differential activation of multiple disease resistance pathways in Arabidopsis.2006 · DOI: 10.1105/tpc.106.044693
`At2g27080`	Required for plant immunity against the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (Pst DC3000).	Pseudomonas syringae Effector Avirulence Protein E Localizes to the Host Plasma Membrane and Down-Regulates the Expression of the NONRACE-SPECIFIC DISEASE RESISTANCE1/HARPIN-INDUCED1-LIKE13 Gene Required for Antibacterial Immunity in Arabidopsis.2015 · DOI: 10.1104/pp.15.00547
`At2g35980`	May play a role in plant immunity.	No verified direct reference in this release
`At5g53730`	Involved in the regulation of sugar, amino acid and some primary metabolite export from companion cells (CCs) to sieve elements (SEs) in phloem.	Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111849
`At3g11650`	May play a role in plant immunity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010096 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051607 defense response to virus Biological Process

GO:0051707 response to other organism Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0110126 phloem loading Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT2G27080

ath:AT2G35980

ath:AT3G11650

ath:AT3G20600

ath:AT5G53730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.641

Rank 1 · LXL04_010096 · OH-1004

Cytoplasm0.144

Rank 2 · LXL04_010096 · OH-1004

Lysosome / Vacuole0.137

Rank 3 · LXL04_010096 · OH-1004

Endoplasmic reticulum0.119

Rank 4 · LXL04_010096 · OH-1004

Golgi apparatus0.065

Rank 5 · LXL04_010096 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03168.20LEA_2109-209 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010096	`PF03168.20`	LEA_2	109	209	5.3e-09	37.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48915`	Arabidopsis thaliana	Protein NDR1	31.609%	Swiss-Prot	moderate database homology
`Q9ZVD2`	Arabidopsis thaliana	NDR1/HIN1-like protein 13	28.638%	Swiss-Prot	weak database homology
`Q9SJ52`	Arabidopsis thaliana	NDR1/HIN1-like protein 10	29.448%	Swiss-Prot	weak database homology
`Q9FI03`	Arabidopsis thaliana	NDR1/HIN1-like protein 26	28.378%	Swiss-Prot	weak database homology
`Q9SRN1`	Arabidopsis thaliana	NDR1/HIN1-like protein 2	29.299%	Swiss-Prot	weak database homology

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