LXL04_010076 | RubberDandelionOmics

Gene overview

LXL04_010076

Reference: OH-1004 Chr: Chr02 Coordinates: 139404925-139408800 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1005 bp · LXL04_010076|LXL04_010076|OH1004|cDNA

ATGTCCAGAGAATCAATTCTCTTGTTTGGTCGTATCAAGCAGTCCCCGCGACTGTATTTCGTGCCCTACCTTCTAAATTGGGGGTTTTCCTTAGCCGATCACAATTTCAATAAAGAAACCGACGAGAAATTCGAATTGATGGATTGGTTGGTTTCTATGCCAAAGGTGGAATTACATGCTCACCTTAATGGTTCCATAAGAAATTCAACTCTACTAGAACTTGCTAGAGAATTGGGGGAGAAGGGAACCATTATCTTCTC...

CDS

Download CDS FASTA

1005 bp · LXL04_010076|LXL04_010076|OH1004|CDS

ATGTCCAGAGAATCAATTCTCTTGTTTGGTCGTATCAAGCAGTCCCCGCGACTGTATTTCGTGCCCTACCTTCTAAATTGGGGGTTTTCCTTAGCCGATCACAATTTCAATAAAGAAACCGACGAGAAATTCGAATTGATGGATTGGTTGGTTTCTATGCCAAAGGTGGAATTACATGCTCACCTTAATGGTTCCATAAGAAATTCAACTCTACTAGAACTTGCTAGAGAATTGGGGGAGAAGGGAACCATTATCTTCTC...

Protein

Download Protein FASTA

334 aa · LXL04_010076|LXL04_010076|OH1004|PROTEIN

MSRESILLFGRIKQSPRLYFVPYLLNWGFSLADHNFNKETDEKFELMDWLVSMPKVELHAHLNGSIRNSTLLELARELGEKGTIIFSDFEHVIKKNDRSLREVFKLFDLIHIVTTDHKTITRITKEVVEDFAAENVVYLELRTTPKRNDSIGMSKRSYMEAVVEGLRSVSSLDINFCCDDIEKCSSDRIEKKKIFVRLLLSIDRRESSEAAMETVKLAMEMRDAGVVGIDLSGNPTVGEWATFFPALKSAREHGLSVTLH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010076`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010076

Location Chr02:139404925-139408800 (-)

Description Similar to MAPDA: N6-mAMP deaminase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g04880`	May act as a deaminase in detoxification of adenosine derivatives bearing N6-methyladenine modifications.	m 6 A RNA Degradation Products Are Catabolized by an Evolutionarily Conserved N 6 -Methyl-AMP Deaminase in Plant and Mammalian Cells.2018 · DOI: 10.1105/tpc.18.00236 Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.2019 · DOI: 10.1093/nar/gkz070 Structure of Arabidopsis thaliana N 6 -methyl-AMP deaminase ADAL with bound GMP and IMP and implications for N 6 -methyl-AMP recognition and processing.2019 · DOI: 10.1080/15476286.2019.1642712

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010076 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006154 adenosine catabolic process Biological Process

GO:0006401 RNA catabolic process Biological Process

GO:0009117 nucleotide metabolic process Biological Process

GO:0046103 inosine biosynthetic process Biological Process

GO:0110052 toxic metabolite repair Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004000 adenosine deaminase activity Molecular Function

GO:0019239 deaminase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0062154 N6-methyl-AMP deaminase activity Molecular Function

KEGG gene cross-reference

ath:AT4G04880

bta:512667

hsa:161823

mmu:75894

xla:443687

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.383

Rank 1 · LXL04_010076 · OH-1004

Cytoplasm0.265

Rank 2 · LXL04_010076 · OH-1004

Mitochondrion0.225

Rank 3 · LXL04_010076 · OH-1004

Nucleus0.164

Rank 4 · LXL04_010076 · OH-1004

Peroxisome0.087

Rank 5 · LXL04_010076 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00962.29A_deaminase54-327 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010076	`PF00962.29`	A_deaminase	54	327	1e-38	134.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LPL7`	Arabidopsis thaliana	N6-mAMP deaminase	73.239%	Swiss-Prot	strong database homology

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