LXL04_010027 | RubberDandelionOmics

Gene overview

LXL04_010027

Reference: OH-1004 Chr: Chr02 Coordinates: 138370754-138371806 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1053 bp · LXL04_010027|LXL04_010027|OH1004|cDNA

ATGGAGTTGAAAGAAGAAATGCATAACCTCATTAAGGTAGGTTTATACGTATTTATTTCACTTGGGTATTGCTATTTTGTAGGCAAGATTGTCCCAAAGGGTGTCCTAAGATTCTTGACTATCCTCCCTGTTGTCGTCCTCTATCTCTTTATCCCACTCTCATTAACCACTGTTCACATGATTGGAGCTTTTTCCTTCTACATGTCATGGCTTGCAAACTTCAAACTCATGCTTTTCGCCTTTGAAAAAGGCCCCCTTTC...

CDS

Download CDS FASTA

1053 bp · LXL04_010027|LXL04_010027|OH1004|CDS

ATGGAGTTGAAAGAAGAAATGCATAACCTCATTAAGGTAGGTTTATACGTATTTATTTCACTTGGGTATTGCTATTTTGTAGGCAAGATTGTCCCAAAGGGTGTCCTAAGATTCTTGACTATCCTCCCTGTTGTCGTCCTCTATCTCTTTATCCCACTCTCATTAACCACTGTTCACATGATTGGAGCTTTTTCCTTCTACATGTCATGGCTTGCAAACTTCAAACTCATGCTTTTCGCCTTTGAAAAAGGCCCCCTTTC...

Protein

Download Protein FASTA

350 aa · LXL04_010027|LXL04_010027|OH1004|PROTEIN

MELKEEMHNLIKVGLYVFISLGYCYFVGKIVPKGVLRFLTILPVVVLYLFIPLSLTTVHMIGAFSFYMSWLANFKLMLFAFEKGPLSSPSVTLLRFFAVACFPIDTTQYTKGFSKPDKPKKTSLLTYGAKGVVLAFCLRIYHNHNEDLHPMMAWCIFGIILYFSLELIVALSSTIVGLFLNVELDQQFDEPYLATSLQDFWGRRWNVMVNRILHPSVYEPTRILSVKVVGRLWAPVPAILATFLVSGLMHELIFFYFTRA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010027`
TK1151 ID	TkA03G491200
OH-1004 ID	LXL04_010027
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 57.143 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010027

Location Chr02:138370754-138371806 (-)

Description Similar to ASAT1: Acyl-CoA--sterol O-acyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51970`	Involved in the esterification of cycloartenol.	Biosynthesis of phytosterol esters: identification of a sterol o-acyltransferase in Arabidopsis.2007 · DOI: 10.1104/pp.107.106278 Involvement of the phospholipid sterol acyltransferase1 in plant sterol homeostasis and leaf senescence.2010 · DOI: 10.1104/pp.109.145672
`At5g55340`	Catalyzes the final step in the synthesis of long-chain linear esters (waxes).	No verified direct reference in this release
`At5g55360`	Catalyzes the final step in the synthesis of long-chain linear esters (waxes).	No verified direct reference in this release
`At5g55350`	Catalyzes the final step in the synthesis of long-chain linear esters (waxes).	No verified direct reference in this release
`At5g55370`	Catalyzes the final step in the synthesis of long-chain linear esters (waxes).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_010027 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006629 lipid metabolic process Biological Process

GO:0016127 sterol catabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008374 O-acyltransferase activity Molecular Function

GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G51970

ath:AT5G55340

ath:AT5G55350

ath:AT5G55360

ath:AT5G55370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.863

Rank 1 · LXL04_010027 · OH-1004

Cell membrane0.061

Rank 2 · LXL04_010027 · OH-1004

Nucleus0.053

Rank 3 · LXL04_010027 · OH-1004

Golgi apparatus0.049

Rank 4 · LXL04_010027 · OH-1004

Cytoplasm0.049

Rank 5 · LXL04_010027 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13813.12MBOAT_2186-270 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010027	`PF13813.12`	MBOAT_2	186	270	5.5e-18	65.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SV07`	Arabidopsis thaliana	Acyl-CoA--sterol O-acyltransferase 1	41.399%	Swiss-Prot	moderate database homology
`Q9FJ76`	Arabidopsis thaliana	Probable long-chain-alcohol O-fatty-acyltransferase 5	43.030%	Swiss-Prot	moderate database homology
`Q9FJ74`	Arabidopsis thaliana	Probable long-chain-alcohol O-fatty-acyltransferase 3	42.136%	Swiss-Prot	moderate database homology
`Q9FJ75`	Arabidopsis thaliana	Probable long-chain-alcohol O-fatty-acyltransferase 4	41.867%	Swiss-Prot	moderate database homology
`Q9FJ73`	Arabidopsis thaliana	Probable long-chain-alcohol O-fatty-acyltransferase 2	41.298%	Swiss-Prot	moderate database homology

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